Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g106460.2.1 | Tomato | nucleus | 66.86 | 97.12 |
| GSMUA_Achr8P05170_001 | Banana | nucleus | 30.59 | 53.73 |
| VIT_03s0088g01240.t01 | Wine grape | nucleus | 51.56 | 52.91 |
| KRH49880 | Soybean | nucleus | 45.89 | 49.24 |
| GSMUA_Achr7P00800_001 | Banana | cytosol | 32.29 | 48.72 |
| GSMUA_Achr2P08590_001 | Banana | nucleus | 35.13 | 46.62 |
| KRH10664 | Soybean | nucleus | 47.88 | 45.8 |
| KRH21680 | Soybean | nucleus, vacuole | 48.44 | 45.48 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.66 | 43.48 |
| Bra013128.1-P | Field mustard | nucleus | 32.86 | 43.45 |
| GSMUA_Achr7P27600_001 | Banana | nucleus | 41.08 | 43.41 |
| CDX89627 | Canola | nucleus | 32.58 | 43.07 |
| CDX93135 | Canola | nucleus | 32.29 | 42.7 |
| GSMUA_Achr3P26180_001 | Banana | nucleus | 35.13 | 42.03 |
| GSMUA_Achr8P26460_001 | Banana | nucleus | 39.09 | 41.57 |
| GSMUA_Achr3P30620_001 | Banana | nucleus | 37.39 | 40.74 |
| GSMUA_Achr4P03160_001 | Banana | nucleus | 36.54 | 39.45 |
| GSMUA_Achr4P23070_001 | Banana | nucleus | 34.84 | 39.3 |
| KXG37671 | Sorghum | nucleus | 36.83 | 36.52 |
| Zm00001d033848_P004 | Maize | nucleus | 35.98 | 34.89 |
| Os03t0725800-01 | Rice | nucleus | 35.41 | 34.82 |
| PGSC0003DMT400033757 | Potato | nucleus | 19.83 | 33.33 |
| Zm00001d013370_P001 | Maize | plastid | 34.56 | 32.71 |
| HORVU4Hr1G009440.2 | Barley | nucleus | 31.16 | 32.26 |
| PGSC0003DMT400078696 | Potato | nucleus | 31.44 | 31.99 |
| TraesCS4B01G056600.2 | Wheat | nucleus | 33.71 | 31.82 |
| TraesCS4D01G056900.2 | Wheat | nucleus | 33.43 | 31.47 |
| PGSC0003DMT400078698 | Potato | nucleus | 18.41 | 31.1 |
| TraesCS4A01G257900.2 | Wheat | nucleus | 33.14 | 31.03 |
| PGSC0003DMT400078699 | Potato | nucleus | 27.2 | 29.72 |
| GSMUA_Achr4P14580_001 | Banana | nucleus | 24.08 | 25.6 |
| GSMUA_Achr4P03170_001 | Banana | nucleus | 23.51 | 24.34 |
| PGSC0003DMT400014089 | Potato | nucleus | 16.15 | 14.84 |
| PGSC0003DMT400014097 | Potato | nucleus | 18.7 | 14.44 |
| PGSC0003DMT400028057 | Potato | nucleus | 15.86 | 14.4 |
| PGSC0003DMT400047220 | Potato | nucleus | 16.71 | 13.05 |
| PGSC0003DMT400032140 | Potato | nucleus | 13.03 | 12.78 |
| PGSC0003DMT400015017 | Potato | nucleus | 16.43 | 12.72 |
| PGSC0003DMT400031899 | Potato | plastid | 15.3 | 12.53 |
| PGSC0003DMT400051672 | Potato | nucleus | 16.15 | 11.95 |
| PGSC0003DMT400033569 | Potato | nucleus | 18.98 | 11.36 |
| PGSC0003DMT400002963 | Potato | nucleus | 18.98 | 11.2 |
| PGSC0003DMT400018046 | Potato | extracellular, nucleus | 16.43 | 10.03 |
| PGSC0003DMT400000652 | Potato | nucleus | 16.15 | 9.53 |
| PGSC0003DMT400045204 | Potato | nucleus | 18.7 | 9.51 |
| PGSC0003DMT400028054 | Potato | cytosol | 1.7 | 3.05 |
| PGSC0003DMT400028052 | Potato | nucleus | 1.7 | 2.96 |
Protein Annotations
| EntrezGene:102585595 | MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| UniProt:M1A291 | PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG400005101 | PGSC:PGSC0003DMG400005101 | EnsemblPlants:PGSC0003DMT400013074 | PFscan:PS50888 |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF100 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002957701 | RefSeq:XP_006367079.1 |
| RefSeq:XP_015160709.1 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005101]
Coordinates
chr1:+:83117886..83119921
Molecular Weight (calculated)
39809.1 Da
IEP (calculated)
6.794
GRAVY (calculated)
-0.541
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MEYYGFNQQW PISSYDELSA ISIATSFGHE NNLHESFMSH DQPLLGHKRP IELSQIVEER PLKNSKTGHN WNNNIENDQI LSSQSVVSPN YSHLMNSSNN
101: YTNQQVVTMK PKEETTNLSS SSISFAADHC HNNMVCHQDS FANQNYMMFK AANNSCQGSN KSVSTNGKLT QAQDHIIAER KRREKLSQRF IALSALIPGL
201: KKMDKASVLG DAIKYLKQLQ EKVKTLEEQT KKKSVESVVF VKKYELYGDG ENSSSDENYS SGTVPVDEAL PEIEARISEK DVLIRIHCEK RKGIVEKTVA
301: EIEKLHLSVI NTCALSFGSS ALDITIIAQM DEEFTMTVKD LVKNLRSALK MFM
101: YTNQQVVTMK PKEETTNLSS SSISFAADHC HNNMVCHQDS FANQNYMMFK AANNSCQGSN KSVSTNGKLT QAQDHIIAER KRREKLSQRF IALSALIPGL
201: KKMDKASVLG DAIKYLKQLQ EKVKTLEEQT KKKSVESVVF VKKYELYGDG ENSSSDENYS SGTVPVDEAL PEIEARISEK DVLIRIHCEK RKGIVEKTVA
301: EIEKLHLSVI NTCALSFGSS ALDITIIAQM DEEFTMTVKD LVKNLRSALK MFM
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.