Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g009640.2.1 | Tomato | cytosol, nucleus, peroxisome | 91.43 | 82.05 |
| GSMUA_Achr7P00800_001 | Banana | cytosol | 30.0 | 26.92 |
| GSMUA_Achr8P05170_001 | Banana | nucleus | 24.76 | 25.87 |
| CDX89511 | Canola | nucleus | 36.19 | 23.68 |
| GSMUA_Achr3P30620_001 | Banana | nucleus | 36.19 | 23.46 |
| AT2G22750.3 | Thale cress | nucleus | 37.14 | 23.42 |
| CDY13737 | Canola | nucleus | 32.86 | 23.39 |
| Bra039924.1-P | Field mustard | nucleus | 34.29 | 23.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.24 | 22.98 |
| GSMUA_Achr8P26460_001 | Banana | nucleus | 36.19 | 22.89 |
| CDY49678 | Canola | nucleus | 36.19 | 22.75 |
| GSMUA_Achr7P27600_001 | Banana | nucleus | 36.19 | 22.75 |
| CDX76899 | Canola | nucleus | 34.76 | 22.6 |
| CDY72199 | Canola | nucleus | 35.71 | 22.46 |
| Bra010617.1-P | Field mustard | nucleus | 35.71 | 22.46 |
| GSMUA_Achr3P26180_001 | Banana | nucleus | 31.43 | 22.37 |
| GSMUA_Achr2P08590_001 | Banana | nucleus | 28.1 | 22.18 |
| KRH42021 | Soybean | nucleus | 20.48 | 22.05 |
| CDX75679 | Canola | nucleus | 35.24 | 22.02 |
| Bra011790.1-P | Field mustard | nucleus | 35.24 | 22.02 |
| AT4G37850.1 | Thale cress | nucleus | 34.29 | 21.95 |
| CDY25628 | Canola | nucleus | 33.33 | 21.74 |
| Bra030210.1-P | Field mustard | nucleus | 33.33 | 21.74 |
| GSMUA_Achr4P03160_001 | Banana | nucleus | 33.33 | 21.41 |
| CDX69336 | Canola | nucleus | 34.29 | 21.3 |
| GSMUA_Achr4P23070_001 | Banana | nucleus | 30.95 | 20.77 |
| VIT_00s0927g00010.t01 | Wine grape | nucleus | 21.9 | 20.18 |
| PGSC0003DMT400013074 | Potato | nucleus | 33.33 | 19.83 |
| HORVU4Hr1G009440.2 | Barley | nucleus | 31.9 | 19.65 |
| PGSC0003DMT400078699 | Potato | nucleus | 30.0 | 19.5 |
| KXG37671 | Sorghum | nucleus | 32.38 | 19.1 |
| Os03t0725800-01 | Rice | nucleus | 32.38 | 18.94 |
| Zm00001d033848_P004 | Maize | nucleus | 31.9 | 18.41 |
| Zm00001d013370_P001 | Maize | plastid | 30.95 | 17.43 |
| TraesCS4B01G056600.2 | Wheat | nucleus | 30.95 | 17.38 |
| PGSC0003DMT400078696 | Potato | nucleus | 28.57 | 17.29 |
| GSMUA_Achr4P14580_001 | Banana | nucleus | 27.14 | 17.17 |
| TraesCS4D01G056900.2 | Wheat | nucleus | 30.48 | 17.07 |
| TraesCS4A01G257900.2 | Wheat | nucleus | 30.48 | 16.98 |
| VIT_00s0384g00020.t01 | Wine grape | nucleus | 15.24 | 16.24 |
| GSMUA_Achr4P03170_001 | Banana | nucleus | 26.19 | 16.13 |
| PGSC0003DMT400078698 | Potato | nucleus | 15.71 | 15.79 |
| PGSC0003DMT400014089 | Potato | nucleus | 20.95 | 11.46 |
| PGSC0003DMT400015017 | Potato | nucleus | 24.29 | 11.18 |
| PGSC0003DMT400028057 | Potato | nucleus | 20.48 | 11.05 |
| PGSC0003DMT400031899 | Potato | plastid | 22.38 | 10.9 |
| PGSC0003DMT400014097 | Potato | nucleus | 23.33 | 10.72 |
| PGSC0003DMT400047220 | Potato | nucleus | 19.05 | 8.85 |
| PGSC0003DMT400051672 | Potato | nucleus | 19.52 | 8.6 |
| PGSC0003DMT400032140 | Potato | nucleus | 14.29 | 8.33 |
| PGSC0003DMT400002963 | Potato | nucleus | 21.9 | 7.69 |
| PGSC0003DMT400033569 | Potato | nucleus | 19.05 | 6.78 |
| PGSC0003DMT400045204 | Potato | nucleus | 21.9 | 6.63 |
| PGSC0003DMT400000652 | Potato | nucleus | 18.57 | 6.52 |
| PGSC0003DMT400018046 | Potato | extracellular, nucleus | 17.62 | 6.4 |
| PGSC0003DMT400028054 | Potato | cytosol | 4.76 | 5.08 |
| PGSC0003DMT400028052 | Potato | nucleus | 4.76 | 4.93 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400033757 | EnsemblPlantsGene:PGSC0003DMG400012969 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR11514 |
| PANTHER:PTHR11514:SF48 | PFAM:PF00010 | PFscan:PS50888 | PGSC:PGSC0003DMG400012969 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0002963948 | UniProt:M1AZM0 | MapMan:15.5.32 | : | : |
Description
Isoform 2 of Transcription factor bHLH18 [Source:PGSC_GENE;Acc:PGSC0003DMG400012969]
Coordinates
chr5:-:2180034..2181147
Molecular Weight (calculated)
23749.8 Da
IEP (calculated)
9.408
GRAVY (calculated)
-0.374
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDLALIFSQ HYNGETSRKQ LHKEEDEKAN SLACIISFNN NFENSLLIPK EEANNTISFS NNNYIIGAKF GERRSGEQAH EHLLAERKRR KKISKLFVSL
101: ASLIPGLNKM DKASILEGAA TLIRQLGERA KQGDHQSTID MMKKSSLLPE VEVKSLEKEL LITILLYKNQ QKGNIDEILS VIQRLHLTIK TTNFMPFGTT
201: SMHITVIAQV
101: ASLIPGLNKM DKASILEGAA TLIRQLGERA KQGDHQSTID MMKKSSLLPE VEVKSLEKEL LITILLYKNQ QKGNIDEILS VIQRLHLTIK TTNFMPFGTT
201: SMHITVIAQV
001: MNSLVGDVPQ SLSSLDDTTT CYNLDASCNK SLVEERPSKI LKTTHISPNL HPFSSSNPPP PKHQPSSRIL SFEKTGLHVM NHNSPNLIFS PKDEEIGLPE
101: HKKAELIIRG TKRAQSLTRS QSNAQDHILA ERKRREKLTQ RFVALSALIP GLKKMDKASV LGDAIKHIKY LQESVKEYEE QKKEKTMESV VLVKKSSLVL
201: DENHQPSSSS SSDGNRNSSS SNLPEIEVRV SGKDVLIKIL CEKQKGNVIK IMGEIEKLGL SITNSNVLPF GPTFDISIIA QKNNNFDMKI EDVVKNLSFG
301: LSKLT
101: HKKAELIIRG TKRAQSLTRS QSNAQDHILA ERKRREKLTQ RFVALSALIP GLKKMDKASV LGDAIKHIKY LQESVKEYEE QKKEKTMESV VLVKKSSLVL
201: DENHQPSSSS SSDGNRNSSS SNLPEIEVRV SGKDVLIKIL CEKQKGNVIK IMGEIEKLGL SITNSNVLPF GPTFDISIIA QKNNNFDMKI EDVVKNLSFG
301: LSKLT
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G22750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.