Factsheet for PGSC0003DMT400045204

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002985
PGSC0003DMT400002991
PGSC0003DMT400007592
PGSC0003DMT400022650
PGSC0003DMT400022651
PGSC0003DMT400036790
PGSC0003DMT400074101
PGSC0003DMT400075155

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32640.1	PGSC0003DMT400007592	AT1G19180.1	18547396
AT1G32640.1	PGSC0003DMT400075155	AT1G19180.1	18547396
AT1G32640.1	PGSC0003DMT400002985	AT1G30135.1	19309455
AT1G32640.1	PGSC0003DMT400002991	AT1G30135.1	19309455
AT1G32640.1	PGSC0003DMT400022650	AT1G30135.1	19309455
AT1G32640.1	PGSC0003DMT400022651	AT1G30135.1	19309455
AT1G32640.1	PGSC0003DMT400036790	AT1G48500.1	19309455
AT1G32640.1	PGSC0003DMT400074101	AT1G48500.1	19309455
AT1G32640.1	PGSC0003DMT400036790	AT3G17860.1	17637675
AT1G32640.1	PGSC0003DMT400074101	AT3G17860.1	17637675

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g076930.1.1	Tomato	nucleus	93.95	94.63
PGSC0003DMT400002963	Potato	nucleus	64.55	74.92
VIT_02s0012g01320.t01	Wine grape	nucleus	65.27	68.33
Bra017527.1-P	Field mustard	nucleus	21.9	67.26
Bra013263.1-P	Field mustard	nucleus	24.35	62.36
CDY58502	Canola	nucleus	40.2	62.14
KRH75613	Soybean	nucleus	56.77	61.85
CDX77688	Canola	nucleus	40.2	61.73
KRH74418	Soybean	nucleus	56.34	60.9
CDX73261	Canola	nucleus	38.76	60.72
CDY26910	Canola	nucleus	38.76	60.72
Bra010178.1-P	Field mustard	nucleus	51.3	59.33
KRH45440	Soybean	nucleus	55.76	59.17
CDY03195	Canola	nucleus	45.97	58.53
CDX84081	Canola	nucleus	43.95	57.66
AT4G17880.1	Thale cress	nucleus	48.27	56.88
CDY35179	Canola	nucleus	45.97	56.76
AT1G32640.1	Thale cress	nucleus	50.86	56.66
Bra024998.1-P	Field mustard	nucleus	46.69	55.86
CDX78808	Canola	nucleus	46.4	55.61
CDY44507	Canola	nucleus	46.25	54.78
KRH39540	Soybean	nucleus	57.49	54.58
AT5G46760.1	Thale cress	nucleus	46.54	54.56
HORVU1Hr1G050560.1	Barley	nucleus	50.86	51.61
TraesCS1B01G208000.1	Wheat	nucleus	50.72	50.79
TraesCS1D01G196900.1	Wheat	nucleus	50.58	50.5
Os10t0575000-01	Rice	nucleus	50.14	49.79
Zm00001d030028_P001	Maize	nucleus	50.29	49.5
CDY03185	Canola	nucleus	33.57	49.26
Bra013264.1-P	Field mustard	nucleus	21.04	49.16
TraesCS1A01G193200.1	Wheat	nucleus	48.99	49.06
KXG39194	Sorghum	nucleus	49.71	48.8
Zm00001d047017_P001	Maize	nucleus	49.28	48.65
CDY59973	Canola	nucleus	35.01	47.74
Bra017520.1-P	Field mustard	nucleus	34.15	47.59
CDY35183	Canola	nucleus	34.44	47.14
CDY03183	Canola	nucleus	34.44	46.95
Bra017523.1-P	Field mustard	nucleus	34.29	46.94
CDX77696	Canola	nucleus	8.07	46.67
AT5G46830.1	Thale cress	nucleus	33.43	45.4
Bra024992.1-P	Field mustard	nucleus	17.58	45.02
CDY33482	Canola	nucleus	17.44	44.65
CDX77699	Canola	nucleus	17.29	44.28
Bra024993.1-P	Field mustard	nucleus	23.78	43.77
PGSC0003DMT400014097	Potato	nucleus	26.8	40.7
PGSC0003DMT400047220	Potato	nucleus	25.22	38.72
PGSC0003DMT400014089	Potato	nucleus	21.33	38.54
PGSC0003DMT400028057	Potato	nucleus	21.04	37.53
HORVU0Hr1G025420.1	Barley	cytosol, nucleus	8.65	36.59
PGSC0003DMT400031899	Potato	plastid	22.05	35.5
Zm00001d052728_P001	Maize	nucleus	13.98	35.27
PGSC0003DMT400015017	Potato	nucleus	23.05	35.09
TraesCS5D01G313500.1	Wheat	nucleus	13.98	34.77
Zm00001d031717_P001	Maize	nucleus	12.68	34.65
TraesCS5A01G306500.1	Wheat	nucleus	13.98	34.52
TraesCS5A01G306200.1	Wheat	nucleus	13.83	34.41
TraesCS5B01G307000.1	Wheat	nucleus	13.83	34.41
TraesCS5D01G313600.1	Wheat	nucleus	13.83	34.41
KXG25462	Sorghum	nucleus	13.69	34.17
TraesCS5A01G306400.1	Wheat	nucleus	10.95	34.08
OQU86344	Sorghum	nucleus	12.39	33.59
TraesCS5B01G306800.1	Wheat	nucleus	13.4	33.21
OQU75588	Sorghum	nucleus	12.54	33.08
OQU80776	Sorghum	nucleus	12.54	33.08
TraesCS1D01G374800.1	Wheat	nucleus	12.54	32.83
TraesCS1A01G369200.1	Wheat	nucleus	9.37	32.83
TraesCS7D01G102200.1	Wheat	nucleus	11.96	32.42
TraesCS5D01G313700.1	Wheat	nucleus	12.82	32.36
EER97058	Sorghum	cytosol, nucleus, plastid	12.82	32.25
TraesCS5B01G306600.1	Wheat	nucleus	12.68	32.23
OQU80778	Sorghum	nucleus	12.54	32.22
TraesCS5A01G306700.1	Wheat	peroxisome	12.68	32.12
TraesCS2B01G469200.1	Wheat	nucleus	11.38	32.11
TraesCSU01G222600.1	Wheat	nucleus	11.38	32.11
HORVU5Hr1G080040.1	Barley	nucleus	12.39	32.09
TraesCS2A01G448500.1	Wheat	nucleus	11.82	32.03
PGSC0003DMT400028054	Potato	cytosol	9.08	31.98
Os08t0543700-00	Rice	nucleus, peroxisome, plastid	12.1	31.94
TraesCS5B01G307100.1	Wheat	nucleus	12.54	31.87
HORVU5Hr1G079900.1	Barley	cytosol	12.39	31.85
TraesCS2B01G469300.1	Wheat	nucleus	11.67	31.64
TraesCS5D01G313400.1	Wheat	nucleus	12.39	31.5
Os09t0519100-00	Rice	nucleus	11.96	31.44
HORVU5Hr1G080080.1	Barley	nucleus, plastid	9.51	31.43
TraesCS5A01G306600.1	Wheat	nucleus	12.39	31.27
PGSC0003DMT400051672	Potato	nucleus	21.47	31.24
PGSC0003DMT400028052	Potato	nucleus	9.08	31.03
PGSC0003DMT400000652	Potato	nucleus	26.66	30.94
Zm00001d006150_P001	Maize	nucleus	12.97	30.93
OQU80775	Sorghum	cytosol, nucleus, peroxisome, plastid	12.39	30.82
OQU80777	Sorghum	nucleus	12.39	30.71
EER99201	Sorghum	nucleus	12.97	30.41
Zm00001d021164_P001	Maize	nucleus	12.68	30.34
PGSC0003DMT400018046	Potato	extracellular, nucleus	25.22	30.28
TraesCS1B01G387900.1	Wheat	nucleus	10.37	30.13
PGSC0003DMT400033757	Potato	nucleus	6.63	21.9
PGSC0003DMT400078698	Potato	nucleus	6.48	21.53
PGSC0003DMT400013074	Potato	nucleus	9.51	18.7
PGSC0003DMT400078699	Potato	nucleus	8.65	18.58
PGSC0003DMT400033569	Potato	nucleus	15.56	18.31
PGSC0003DMT400078696	Potato	nucleus	8.79	17.58
PGSC0003DMT400032140	Potato	nucleus	8.79	16.94

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:AJ630505	ProteinID:CAF74710	ProteinID:CAF74710.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M1BHA0	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	EnsemblPlantsGene:PGSC0003DMG400017535
PGSC:PGSC0003DMG400017535	EnsemblPlants:PGSC0003DMT400045204	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF43	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000296D6D7	InterPro:bHLH_dom	SEG:seg	:	:

Description

MYC transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400017535]

Coordinates

chr8:+:49619607..49622166

Molecular Weight (calculated)

75944.0 Da

IEP (calculated)

5.358

GRAVY (calculated)

-0.634

Length

694 amino acids

Sequence
(BLAST)

001: MNLWNNSTSD DNVSMMEAFM SSDLSFWATT NSTTTNSASA AVVGVNSNLL HTNNNNNNNN NSPSVFPLSS STSVSAAAAV DASKSMPFFN QETLQQRLQA
101: LIDGARETWT YAIFWQSSVV DFSSPSVLGW GDGYYKGEED KAKRKLAVSS PAYIAEQEHR KKVLRELNSL ISGAPAGTDD AVDEEVTDTE WFFLISMTQS
201: FVNGSGLPGQ ALYSSSPIWV AGTEKLAASH CERVRQAQGF GLQTIVCIPS ANGVVELGST ELIVQSSDLM NKVRVLFNFS NDFGSGSWAV QPENDPSALW
301: LTEPSSSGME VRESLNTVQT NSVPSSNSNK QIAYGNENNH QSGNGQSCYN QQQQQNNPPQ QQTQGFFTRE LNFSEFGFDG NSNKNENASL SCKPESGEIL
401: NFGDSTKKSA SSANVNLFTG QSQFGAVEEN NNNKNKKRSA TSRGSNEEGM LSFVSGTVLP SSGMKSGGGR GEDSEHSDLE ASVVKEADSS RVVEPEKRPR
501: KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN VSKMDKASLL GDAISYINEL KSKLQNTESD KEDLKSQIED LKKESRRPGP PPPNQDLKMS
601: SHTGGKIVDV DIDVKIIGWD AMIRIQCNKK NHPAARLMAA LMELDLDVHH ASVSVVNDLM IQQATVKMGS RHYTEEQLRV ALTSKIAETP LESR

Best Arabidopsis Sequence Match ( AT1G32640.1 )
(BLAST)

001: MTDYRLQPTM NLWTTDDNAS MMEAFMSSSD ISTLWPPAST TTTTATTETT PTPAMEIPAQ AGFNQETLQQ RLQALIEGTH EGWTYAIFWQ PSYDFSGASV
101: LGWGDGYYKG EEDKANPRRR SSSPPFSTPA DQEYRKKVLR ELNSLISGGV APSDDAVDEE VTDTEWFFLV SMTQSFACGA GLAGKAFATG NAVWVSGSDQ
201: LSGSGCERAK QGGVFGMHTI ACIPSANGVV EVGSTEPIRQ SSDLINKVRI LFNFDGGAGD LSGLNWNLDP DQGENDPSMW INDPIGTPGS NEPGNGAPSS
301: SSQLFSKSIQ FENGSSSTIT ENPNLDPTPS PVHSQTQNPK FNNTFSRELN FSTSSSTLVK PRSGEILNFG DEGKRSSGNP DPSSYSGQTQ FENKRKRSMV
401: LNEDKVLSFG DKTAGESDHS DLEASVVKEV AVEKRPKKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNVSK MDKASLLGDA IAYINELKSK
501: VVKTESEKLQ IKNQLEEVKL ELAGRKASAS GGDMSSSCSS IKPVGMEIEV KIIGWDAMIR VESSKRNHPA ARLMSALMDL ELEVNHASMS VVNDLMIQQA
601: TVKMGFRIYT QEQLRASLIS KIG

Arabidopsis Description

MYC2ZBF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W7C3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.