Factsheet for PGSC0003DMT400022651

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

nucleus 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000652
PGSC0003DMT400002963
PGSC0003DMT400007592
PGSC0003DMT400018046
PGSC0003DMT400045204
PGSC0003DMT400075155

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30135.1	PGSC0003DMT400000652	AT1G01260.1	21798944
AT1G30135.1	PGSC0003DMT400018046	AT1G01260.1	21798944
AT1G30135.1	PGSC0003DMT400007592	AT1G19180.1	19309455
AT1G30135.1	PGSC0003DMT400075155	AT1G19180.1	19309455
AT1G30135.1	PGSC0003DMT400007592	AT1G19180.1	21798944
AT1G30135.1	PGSC0003DMT400075155	AT1G19180.1	21798944
AT1G30135.1	PGSC0003DMT400002963	AT1G32640.1	19309455
AT1G30135.1	PGSC0003DMT400045204	AT1G32640.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g036660.2.1	Tomato	mitochondrion	87.1	85.04
PGSC0003DMT400002991	Potato	nucleus	62.1	72.64
PGSC0003DMT400022650	Potato	cytosol	62.1	66.96
PGSC0003DMT400002985	Potato	cytosol	52.42	56.03
VIT_10s0003g03790.t01	Wine grape	cytosol	53.23	51.97
VIT_04s0008g00110.t01	Wine grape	cytosol	40.32	51.02
VIT_10s0003g03800.t01	Wine grape	cytosol	51.61	50.39
VIT_10s0003g03810.t01	Wine grape	nucleus	37.1	47.92
KRH58647	Soybean	cytosol	50.81	47.01
KRH11175	Soybean	cytosol	48.39	45.11
KRH21078	Soybean	cytosol	49.19	44.2
Bra021923.1-P	Field mustard	cytosol	40.32	42.73
KRH42552	Soybean	nucleus	51.61	42.67
CDY51470	Canola	nucleus	44.35	42.31
CDX84301	Canola	cytosol	39.52	42.24
Bra005407.1-P	Field mustard	cytosol	39.52	42.24
CDY17268	Canola	cytosol	39.52	42.24
CDY43664	Canola	nucleus	40.32	42.02
CDX90230	Canola	nucleus	43.55	41.54
Bra010794.1-P	Field mustard	nucleus	43.55	41.54
CDX99884	Canola	nucleus	43.55	40.91
AT1G30135.1	Thale cress	nucleus	42.74	40.46
Bra022981.1-P	Field mustard	nucleus	35.48	38.94
Bra032362.1-P	Field mustard	nucleus	41.13	38.35
CDY26288	Canola	nucleus	40.32	37.59
CDX84639	Canola	nucleus	33.87	36.84
CDX79568	Canola	nucleus	33.06	36.28
AT2G34600.1	Thale cress	nucleus	41.13	34.46
GSMUA_Achr7P01220_001	Banana	extracellular	31.45	32.77
GSMUA_Achr9P10340_001	Banana	cytosol	32.26	31.5
GSMUA_Achr6P31200_001	Banana	nucleus	35.48	29.53
GSMUA_Achr2P12970_001	Banana	cytosol	31.45	28.68
GSMUA_Achr4P31480_001	Banana	nucleus	32.26	26.49
GSMUA_Achr7P01230_001	Banana	nucleus	37.9	22.27
GSMUA_Achr3P23250_001	Banana	cytosol	25.0	17.42

Protein Annotations

EnsemblPlants:PGSC0003DMT400022651	EnsemblPlantsGene:PGSC0003DMG400008782	EntrezGene:102603711	InterPro:CCT_CS	InterPro:IPR010399	InterPro:Tify_dom
PANTHER:PTHR33077	PANTHER:PTHR33077:SF17	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	PGSC:PGSC0003DMG400008782
RefSeq:XP_006346841.1	SEG:seg	SMART:SM00979	UniParc:UPI00029568A8	UniProt:M1AH03	MapMan:15.5.45

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400008782]

Coordinates

chr8:+:12051013..12052531

Molecular Weight (calculated)

14342.0 Da

IEP (calculated)

9.503

GRAVY (calculated)

-0.885

Length

124 amino acids

Sequence
(BLAST)

001: MRRNCNLELR LMPPSLSTFS PNNCNNTSYF SMEEDKESTE LENKSQPLTI FYNGKFVVSH VTDLQAKAII YLASRETEEK TNKTSSPMSE PSSPLLQPQT
101: VKKSLQRFLQ KRKNRIETTS PYHH

Best Arabidopsis Sequence Match ( AT1G30135.1 )
(BLAST)

001: MKLQQNCDLE LRLFPTSYDS DSSDTTSVVE STSSGNPQPN EESQRITIFY NGKMCFSSDV THLQARSIIS IASREMKTKS SSNGSDPPNK STSFHHNQLP
101: NPKASMKKSL QSFLQKRKIR IQATSPYHSR R

Arabidopsis Description

TIFY5AProtein TIFY 5A [Source:UniProtKB/Swiss-Prot;Acc:Q8LBM2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.