CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97199
KRH06456
KRH39540
KRH45440
KRH47899
KRH68922
KRH74418
KRH75613

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30135.1	KRG97199	AT1G01260.1	21798944
AT1G30135.1	KRH06456	AT1G01260.1	21798944
AT1G30135.1	KRH47899	AT1G01260.1	21798944
AT1G30135.1	KRH68922	AT1G01260.1	21798944
AT1G30135.1	KRH39540	AT1G32640.1	19309455
AT1G30135.1	KRH45440	AT1G32640.1	19309455
AT1G30135.1	KRH74418	AT1G32640.1	19309455
AT1G30135.1	KRH75613	AT1G32640.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21078	Soybean	cytosol	85.71	82.61
KRH58647	Soybean	cytosol	62.41	61.94
VIT_04s0008g00110.t01	Wine grape	cytosol	42.11	57.14
KRH42552	Soybean	nucleus	63.16	56.0
VIT_10s0003g03790.t01	Wine grape	cytosol	51.13	53.54
Solyc08g036620.2.1	Tomato	nucleus	41.35	53.4
VIT_10s0003g03810.t01	Wine grape	nucleus	38.35	53.12
PGSC0003DMT400002991	Potato	nucleus	42.11	52.83
VIT_10s0003g03800.t01	Wine grape	cytosol	49.62	51.97
PGSC0003DMT400022650	Potato	cytosol	44.36	51.3
Solyc08g036640.2.1	Tomato	nucleus	42.86	50.89
PGSC0003DMT400002985	Potato	cytosol	42.86	49.14
PGSC0003DMT400022651	Potato	mitochondrion, nucleus	45.11	48.39
Solyc08g036660.2.1	Tomato	mitochondrion	43.61	45.67
CDX90230	Canola	nucleus	42.11	43.08
Bra010794.1-P	Field mustard	nucleus	42.11	43.08
Bra021923.1-P	Field mustard	cytosol	37.59	42.73
CDY51470	Canola	nucleus	41.35	42.31
CDY43664	Canola	nucleus	37.59	42.02
Bra032362.1-P	Field mustard	nucleus	41.35	41.35
CDY26288	Canola	nucleus	40.6	40.6
CDX99884	Canola	nucleus	39.85	40.15
Bra022981.1-P	Field mustard	nucleus	33.83	39.82
CDX84301	Canola	cytosol	34.59	39.66
GSMUA_Achr9P10340_001	Banana	cytosol	37.59	39.37
AT1G30135.1	Thale cress	nucleus	38.35	38.93
CDY17268	Canola	cytosol	33.83	38.79
Bra005407.1-P	Field mustard	cytosol	33.83	38.79
CDX84639	Canola	nucleus	33.08	38.6
CDX79568	Canola	nucleus	31.58	37.17
GSMUA_Achr2P12970_001	Banana	cytosol	33.08	32.35
GSMUA_Achr6P31200_001	Banana	nucleus	36.09	32.21
AT2G34600.1	Thale cress	nucleus	35.34	31.76
GSMUA_Achr7P01220_001	Banana	extracellular	27.82	31.09
GSMUA_Achr4P31480_001	Banana	nucleus	32.33	28.48
GSMUA_Achr7P01230_001	Banana	nucleus	38.35	24.17
GSMUA_Achr3P23250_001	Banana	cytosol	22.56	16.85

Protein Annotations

EntrezGene:100803886	MapMan:15.5.45	EMBL:ACUP02009186	InterPro:CCT_CS	EnsemblPlantsGene:GLYMA_15G093100	GO:GO:0003674
GO:GO:0003714	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009611	GO:GO:0009719	GO:GO:0009987	GO:GO:0031347	GO:GO:1903507	GO:GO:2000022
UniProt:I1MF23	InterPro:IPR010399	EnsemblPlants:KRH11175	ProteinID:KRH11175	ProteinID:KRH11175.1	PFAM:PF06200
PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF17	SMART:SM00979	InterPro:Tify_dom
UniParc:UPI000233B162	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:7225813..7228753

Molecular Weight (calculated)

15203.1 Da

IEP (calculated)

8.736

GRAVY (calculated)

-0.806

Length

133 amino acids

Sequence
(BLAST)

001: MRRNCNLELA LFPPSDSGPP MVDNVEEEAS EISPMQNLFH RQEQQQPLTI FYDGKICVAD VTELQAKSIL MLANRKLEER VRTPTGSEPS SPTVMQSNNQ
101: LYSPGTGPSM RKSLQRFLQK RRNRVQEASP YRH

Best Arabidopsis Sequence Match ( AT1G30135.1 )
(BLAST)

001: MKLQQNCDLE LRLFPTSYDS DSSDTTSVVE STSSGNPQPN EESQRITIFY NGKMCFSSDV THLQARSIIS IASREMKTKS SSNGSDPPNK STSFHHNQLP
101: NPKASMKKSL QSFLQKRKIR IQATSPYHSR R

Arabidopsis Description

TIFY5AProtein TIFY 5A [Source:UniProtKB/Swiss-Prot;Acc:Q8LBM2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.