CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97199
KRH06456
KRH39540
KRH45440
KRH47899
KRH68922
KRH74418
KRH75613

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30135.1	KRG97199	AT1G01260.1	21798944
AT1G30135.1	KRH06456	AT1G01260.1	21798944
AT1G30135.1	KRH47899	AT1G01260.1	21798944
AT1G30135.1	KRH68922	AT1G01260.1	21798944
AT1G30135.1	KRH39540	AT1G32640.1	19309455
AT1G30135.1	KRH45440	AT1G32640.1	19309455
AT1G30135.1	KRH74418	AT1G32640.1	19309455
AT1G30135.1	KRH75613	AT1G32640.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42552	Soybean	nucleus	83.58	74.67
KRH11175	Soybean	cytosol	61.94	62.41
KRH21078	Soybean	cytosol	63.43	61.59
VIT_04s0008g00110.t01	Wine grape	cytosol	43.28	59.18
VIT_10s0003g03790.t01	Wine grape	cytosol	52.24	55.12
PGSC0003DMT400022650	Potato	cytosol	47.01	54.78
VIT_10s0003g03800.t01	Wine grape	cytosol	50.75	53.54
VIT_10s0003g03810.t01	Wine grape	nucleus	38.06	53.12
Solyc08g036620.2.1	Tomato	nucleus	40.3	52.43
Solyc08g036640.2.1	Tomato	nucleus	43.28	51.79
PGSC0003DMT400002991	Potato	nucleus	40.3	50.94
PGSC0003DMT400002985	Potato	cytosol	44.03	50.86
PGSC0003DMT400022651	Potato	mitochondrion, nucleus	47.01	50.81
Solyc08g036660.2.1	Tomato	mitochondrion	46.27	48.82
Bra021923.1-P	Field mustard	cytosol	40.3	46.15
CDY43664	Canola	nucleus	40.3	45.38
CDX84301	Canola	cytosol	36.57	42.24
CDX90230	Canola	nucleus	40.3	41.54
Bra010794.1-P	Field mustard	nucleus	40.3	41.54
CDY17268	Canola	cytosol	35.82	41.38
Bra005407.1-P	Field mustard	cytosol	35.82	41.38
GSMUA_Achr9P10340_001	Banana	cytosol	38.81	40.94
CDY51470	Canola	nucleus	39.55	40.77
Bra022981.1-P	Field mustard	nucleus	34.33	40.71
AT1G30135.1	Thale cress	nucleus	39.55	40.46
CDX84639	Canola	nucleus	33.58	39.47
CDX99884	Canola	nucleus	38.81	39.39
Bra032362.1-P	Field mustard	nucleus	38.81	39.1
CDX79568	Canola	nucleus	32.84	38.94
CDY26288	Canola	nucleus	38.06	38.35
AT2G34600.1	Thale cress	nucleus	37.31	33.78
GSMUA_Achr6P31200_001	Banana	nucleus	36.57	32.89
GSMUA_Achr2P12970_001	Banana	cytosol	32.84	32.35
GSMUA_Achr7P01220_001	Banana	extracellular	28.36	31.93
GSMUA_Achr4P31480_001	Banana	nucleus	35.82	31.79
GSMUA_Achr7P01230_001	Banana	nucleus	38.06	24.17
GSMUA_Achr3P23250_001	Banana	cytosol	26.12	19.66

Protein Annotations

EntrezGene:100781356	MapMan:15.5.45	EMBL:ACUP02003280	InterPro:CCT_CS	EnsemblPlantsGene:GLYMA_05G141200	GO:GO:0003674
GO:GO:0003714	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009611	GO:GO:0009719	GO:GO:0009987	GO:GO:0031347	GO:GO:1903507	GO:GO:2000022
UniProt:I1K3F4	InterPro:IPR010399	ProteinID:KRH58646.1	EnsemblPlants:KRH58647	ProteinID:KRH58647	ProteinID:KRH58647.1
PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF17	SMART:SM00979
InterPro:Tify_dom	UniParc:UPI000233954C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:33455610..33458383

Molecular Weight (calculated)

15538.7 Da

IEP (calculated)

9.634

GRAVY (calculated)

-0.870

Length

134 amino acids

Sequence
(BLAST)

001: MRKNCKLELR LFPPSLSDLR PMMEAEVSDS PQQQDPHHQQ QQQLQHPLTI FYDGKICVSD VTELQARSIL MLANKETERR VMTPTGSEPS SPILLQSPHN
101: NMYSPSTGLS MKRSLQRFLQ KRKNRVQETS PYHH

Best Arabidopsis Sequence Match ( AT1G30135.1 )
(BLAST)

001: MKLQQNCDLE LRLFPTSYDS DSSDTTSVVE STSSGNPQPN EESQRITIFY NGKMCFSSDV THLQARSIIS IASREMKTKS SSNGSDPPNK STSFHHNQLP
101: NPKASMKKSL QSFLQKRKIR IQATSPYHSR R

Arabidopsis Description

TIFY5AProtein TIFY 5A [Source:UniProtKB/Swiss-Prot;Acc:Q8LBM2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.