Factsheet for Solyc08g036660.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g096050.2.1
Solyc05g050560.1.1
Solyc07g042170.2.1
Solyc08g005050.2.1
Solyc08g076930.1.1
Solyc12g009220.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30135.1	Solyc01g096050.2.1	AT1G01260.1	21798944
AT1G30135.1	Solyc05g050560.1.1	AT1G01260.1	21798944
AT1G30135.1	Solyc07g042170.2.1	AT1G19180.1	19309455
AT1G30135.1	Solyc12g009220.1.1	AT1G19180.1	19309455
AT1G30135.1	Solyc07g042170.2.1	AT1G19180.1	21798944
AT1G30135.1	Solyc12g009220.1.1	AT1G19180.1	21798944
AT1G30135.1	Solyc08g005050.2.1	AT1G32640.1	19309455
AT1G30135.1	Solyc08g076930.1.1	AT1G32640.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022651	Potato	mitochondrion, nucleus	85.04	87.1
Solyc08g036620.2.1	Tomato	nucleus	61.42	75.73
Solyc08g036640.2.1	Tomato	nucleus	60.63	68.75
VIT_10s0003g03790.t01	Wine grape	cytosol	49.61	49.61
VIT_10s0003g03800.t01	Wine grape	cytosol	48.82	48.82
VIT_04s0008g00110.t01	Wine grape	cytosol	37.01	47.96
KRH58647	Soybean	cytosol	48.82	46.27
VIT_10s0003g03810.t01	Wine grape	nucleus	34.65	45.83
KRH11175	Soybean	cytosol	45.67	43.61
KRH21078	Soybean	cytosol	47.24	43.48
KRH42552	Soybean	nucleus	50.39	42.67
CDX84301	Canola	cytosol	37.8	41.38
CDY17268	Canola	cytosol	37.8	41.38
Bra005407.1-P	Field mustard	cytosol	37.8	41.38
Bra021923.1-P	Field mustard	cytosol	37.8	41.03
CDY51470	Canola	nucleus	41.73	40.77
CDY43664	Canola	nucleus	37.8	40.34
CDX99884	Canola	nucleus	41.73	40.15
CDX90230	Canola	nucleus	40.94	40.0
Bra010794.1-P	Field mustard	nucleus	40.94	40.0
AT1G30135.1	Thale cress	nucleus	40.94	39.69
Bra022981.1-P	Field mustard	nucleus	33.86	38.05
Bra032362.1-P	Field mustard	nucleus	38.58	36.84
CDY26288	Canola	nucleus	37.8	36.09
CDX84639	Canola	nucleus	32.28	35.96
CDX79568	Canola	nucleus	31.5	35.4
AT2G34600.1	Thale cress	nucleus	39.37	33.78
GSMUA_Achr7P01220_001	Banana	extracellular	31.5	33.61
GSMUA_Achr9P10340_001	Banana	cytosol	30.71	30.71
GSMUA_Achr2P12970_001	Banana	cytosol	30.71	28.68
GSMUA_Achr6P31200_001	Banana	nucleus	33.07	28.19
GSMUA_Achr4P31480_001	Banana	nucleus	31.5	26.49
GSMUA_Achr7P01230_001	Banana	nucleus	37.01	22.27
GSMUA_Achr3P23250_001	Banana	cytosol	23.62	16.85

Protein Annotations

MapMan:15.5.45	InterPro:CCT_CS	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009719	GO:GO:0009987
GO:GO:0031347	GO:GO:1903507	GO:GO:2000022	InterPro:IPR010399	UniProt:K4CK26	PFAM:PF06200
PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF17	SMART:SM00979	EnsemblPlantsGene:Solyc08g036660.2
EnsemblPlants:Solyc08g036660.2.1	InterPro:Tify_dom	UniParc:UPI000276C07C	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:10476049..10477693

Molecular Weight (calculated)

14598.3 Da

IEP (calculated)

9.503

GRAVY (calculated)

-0.805

Length

127 amino acids

Sequence
(BLAST)

001: MRRNCNLEFR LMPPSLSTFS PNICSNNNTS SYFSMEEDKE STELEQKSEP LTIFYNGKLV VSHVTDLQAK AIIYLASRET EEKTNKSLSP ISEPSSPLLQ
101: PQTVKKSLQR FLQKRKSRTQ TTSPYHH

Best Arabidopsis Sequence Match ( AT1G30135.1 )
(BLAST)

001: MKLQQNCDLE LRLFPTSYDS DSSDTTSVVE STSSGNPQPN EESQRITIFY NGKMCFSSDV THLQARSIIS IASREMKTKS SSNGSDPPNK STSFHHNQLP
101: NPKASMKKSL QSFLQKRKIR IQATSPYHSR R

Arabidopsis Description

TIFY5AProtein TIFY 5A [Source:UniProtKB/Swiss-Prot;Acc:Q8LBM2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.