CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97199
KRH06456
KRH39540
KRH45440
KRH47899
KRH68922
KRH74418
KRH75613

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30135.1	KRG97199	AT1G01260.1	21798944
AT1G30135.1	KRH06456	AT1G01260.1	21798944
AT1G30135.1	KRH47899	AT1G01260.1	21798944
AT1G30135.1	KRH68922	AT1G01260.1	21798944
AT1G30135.1	KRH39540	AT1G32640.1	19309455
AT1G30135.1	KRH45440	AT1G32640.1	19309455
AT1G30135.1	KRH74418	AT1G32640.1	19309455
AT1G30135.1	KRH75613	AT1G32640.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58647	Soybean	cytosol	74.67	83.58
KRH21078	Soybean	cytosol	59.33	64.49
KRH11175	Soybean	cytosol	56.0	63.16
VIT_04s0008g00110.t01	Wine grape	cytosol	39.33	60.2
PGSC0003DMT400022650	Potato	cytosol	44.0	57.39
VIT_10s0003g03790.t01	Wine grape	cytosol	48.0	56.69
VIT_10s0003g03800.t01	Wine grape	cytosol	46.67	55.12
Solyc08g036640.2.1	Tomato	nucleus	40.67	54.46
Solyc08g036620.2.1	Tomato	nucleus	37.33	54.37
VIT_10s0003g03810.t01	Wine grape	nucleus	34.67	54.17
PGSC0003DMT400002991	Potato	nucleus	38.0	53.77
PGSC0003DMT400022651	Potato	mitochondrion, nucleus	42.67	51.61
PGSC0003DMT400002985	Potato	cytosol	39.33	50.86
Solyc08g036660.2.1	Tomato	mitochondrion	42.67	50.39
Bra021923.1-P	Field mustard	cytosol	36.0	46.15
CDY43664	Canola	nucleus	36.0	45.38
Bra022981.1-P	Field mustard	nucleus	32.0	42.48
CDY51470	Canola	nucleus	36.67	42.31
CDX90230	Canola	nucleus	36.67	42.31
Bra010794.1-P	Field mustard	nucleus	36.67	42.31
CDX84301	Canola	cytosol	32.67	42.24
AT1G30135.1	Thale cress	nucleus	36.67	41.98
CDY17268	Canola	cytosol	32.0	41.38
Bra005407.1-P	Field mustard	cytosol	32.0	41.38
CDX84639	Canola	nucleus	31.33	41.23
GSMUA_Achr9P10340_001	Banana	cytosol	34.67	40.94
CDX99884	Canola	nucleus	35.33	40.15
Bra032362.1-P	Field mustard	nucleus	35.33	39.85
CDX79568	Canola	nucleus	30.0	39.82
CDY26288	Canola	nucleus	34.67	39.1
AT2G34600.1	Thale cress	nucleus	34.67	35.14
GSMUA_Achr6P31200_001	Banana	nucleus	32.67	32.89
GSMUA_Achr2P12970_001	Banana	cytosol	29.33	32.35
GSMUA_Achr7P01220_001	Banana	extracellular	25.33	31.93
GSMUA_Achr4P31480_001	Banana	nucleus	31.33	31.13
GSMUA_Achr7P01230_001	Banana	nucleus	32.0	22.75
GSMUA_Achr3P23250_001	Banana	cytosol	24.0	20.22

Protein Annotations

EntrezGene:100305565	MapMan:15.5.45	EMBL:ACUP02004813	EMBL:BT089229	UniProt:C6SVN6	InterPro:CCT_CS
EnsemblPlantsGene:GLYMA_08G096500	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009719	GO:GO:0009987	GO:GO:0031347
GO:GO:1903507	GO:GO:2000022	InterPro:IPR010399	EnsemblPlants:KRH42552	ProteinID:KRH42552	ProteinID:KRH42552.1
EMBL:KT031245	PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF17
SMART:SM00979	InterPro:Tify_dom	UniParc:UPI0001B15818	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:7395970..7398088

Molecular Weight (calculated)

17344.0 Da

IEP (calculated)

10.415

GRAVY (calculated)

-0.879

Length

150 amino acids

Sequence
(BLAST)

001: MRKNCNLELR LFPPSLSDLR PMMEAEVSER PQQQVAHHQQ QQQPQPQHPL TIFYDGKISV SDVTELQARS ILMLANKEME KRVMTPTGSE PSSPILLQSP
101: HNMYSPGTGL SMKRSLQRFL QKRKNRVQET SPYHHELINV KLSKSSRENK

Best Arabidopsis Sequence Match ( AT1G30135.1 )
(BLAST)

001: MKLQQNCDLE LRLFPTSYDS DSSDTTSVVE STSSGNPQPN EESQRITIFY NGKMCFSSDV THLQARSIIS IASREMKTKS SSNGSDPPNK STSFHHNQLP
101: NPKASMKKSL QSFLQKRKIR IQATSPYHSR R

Arabidopsis Description

TIFY5AProtein TIFY 5A [Source:UniProtKB/Swiss-Prot;Acc:Q8LBM2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.