Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26288 | Canola | nucleus | 88.64 | 87.97 |
| CDX90230 | Canola | nucleus | 83.33 | 84.62 |
| CDY51470 | Canola | nucleus | 81.82 | 83.08 |
| AT1G30135.1 | Thale cress | nucleus | 65.15 | 65.65 |
| CDY43664 | Canola | nucleus | 46.97 | 52.1 |
| Solyc08g036620.2.1 | Tomato | nucleus | 37.88 | 48.54 |
| CDY17268 | Canola | cytosol | 42.42 | 48.28 |
| CDX84301 | Canola | cytosol | 41.67 | 47.41 |
| PGSC0003DMT400002985 | Potato | cytosol | 40.91 | 46.55 |
| PGSC0003DMT400002991 | Potato | nucleus | 37.12 | 46.23 |
| PGSC0003DMT400022650 | Potato | cytosol | 40.15 | 46.09 |
| VIT_04s0008g00110.t01 | Wine grape | cytosol | 34.09 | 45.92 |
| CDX84639 | Canola | nucleus | 37.88 | 43.86 |
| VIT_10s0003g03810.t01 | Wine grape | nucleus | 31.82 | 43.75 |
| Solyc08g036640.2.1 | Tomato | nucleus | 37.12 | 43.75 |
| PGSC0003DMT400022651 | Potato | mitochondrion, nucleus | 40.91 | 43.55 |
| VIT_10s0003g03790.t01 | Wine grape | cytosol | 41.67 | 43.31 |
| VIT_10s0003g03800.t01 | Wine grape | cytosol | 40.91 | 42.52 |
| CDX79568 | Canola | nucleus | 36.36 | 42.48 |
| Solyc08g036660.2.1 | Tomato | mitochondrion | 40.15 | 41.73 |
| KRH11175 | Soybean | cytosol | 40.15 | 39.85 |
| KRH58647 | Soybean | cytosol | 39.39 | 38.81 |
| KRH21078 | Soybean | cytosol | 37.12 | 35.51 |
| KRH42552 | Soybean | nucleus | 40.15 | 35.33 |
| GSMUA_Achr9P10340_001 | Banana | cytosol | 32.58 | 33.86 |
| GSMUA_Achr7P01220_001 | Banana | extracellular | 29.55 | 32.77 |
| GSMUA_Achr6P31200_001 | Banana | nucleus | 36.36 | 32.21 |
| GSMUA_Achr2P12970_001 | Banana | cytosol | 31.82 | 30.88 |
| GSMUA_Achr4P31480_001 | Banana | nucleus | 32.58 | 28.48 |
| GSMUA_Achr7P01230_001 | Banana | nucleus | 31.06 | 19.43 |
| GSMUA_Achr3P23250_001 | Banana | cytosol | 22.73 | 16.85 |
Protein Annotations
| EnsemblPlants:CDX99884 | EnsemblPlantsGene:GSBRNA2T00108652001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF17 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | ProteinID:CDX99884 | ProteinID:CDX99884.1 |
| SMART:SM00979 | UniParc:UPI0004EE6EF1 | MapMan:15.5.45 | : | : | : |
Description
BnaC05g23060D
Coordinates
chrLK031914:+:1138465..1139237
Molecular Weight (calculated)
15285.0 Da
IEP (calculated)
10.046
GRAVY (calculated)
-1.039
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKNCDLELR LFPTSCITDS DNSVVESRSS GNSLPKEEET QRLTIFYNGK MCVYSNVTHH QAKSIISMAS REMEEKLSSN GPDPRNRSTR LNNYHQQLPN
101: PKASMKRSLQ SFLQKRQIRL QATSPYHQHS RR
101: PKASMKRSLQ SFLQKRQIRL QATSPYHQHS RR
001: MKLQQNCDLE LRLFPTSYDS DSSDTTSVVE STSSGNPQPN EESQRITIFY NGKMCFSSDV THLQARSIIS IASREMKTKS SSNGSDPPNK STSFHHNQLP
101: NPKASMKKSL QSFLQKRKIR IQATSPYHSR R
101: NPKASMKKSL QSFLQKRKIR IQATSPYHSR R
Arabidopsis Description
TIFY5AProtein TIFY 5A [Source:UniProtKB/Swiss-Prot;Acc:Q8LBM2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.