Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- golgi 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_10s0003g03810.t01 | Wine grape | nucleus | 29.8 | 46.88 |
| VIT_04s0008g00110.t01 | Wine grape | cytosol | 29.14 | 44.9 |
| GSMUA_Achr2P12970_001 | Banana | cytosol | 40.4 | 44.85 |
| GSMUA_Achr7P01220_001 | Banana | extracellular | 34.44 | 43.7 |
| Solyc08g036620.2.1 | Tomato | nucleus | 27.81 | 40.78 |
| VIT_10s0003g03790.t01 | Wine grape | cytosol | 33.77 | 40.16 |
| GSMUA_Achr9P10340_001 | Banana | cytosol | 33.77 | 40.16 |
| PGSC0003DMT400002985 | Potato | cytosol | 29.8 | 38.79 |
| VIT_10s0003g03800.t01 | Wine grape | cytosol | 32.45 | 38.58 |
| PGSC0003DMT400022650 | Potato | cytosol | 29.14 | 38.26 |
| PGSC0003DMT400002991 | Potato | nucleus | 26.49 | 37.74 |
| Solyc08g036640.2.1 | Tomato | nucleus | 27.15 | 36.61 |
| KRH58647 | Soybean | cytosol | 31.79 | 35.82 |
| GSMUA_Achr6P31200_001 | Banana | nucleus | 34.44 | 34.9 |
| Bra022981.1-P | Field mustard | nucleus | 25.83 | 34.51 |
| Bra032362.1-P | Field mustard | nucleus | 29.8 | 33.83 |
| CDY26288 | Canola | nucleus | 29.14 | 33.08 |
| CDY51470 | Canola | nucleus | 28.48 | 33.08 |
| Bra010794.1-P | Field mustard | nucleus | 28.48 | 33.08 |
| CDX90230 | Canola | nucleus | 28.48 | 33.08 |
| AT1G30135.1 | Thale cress | nucleus | 28.48 | 32.82 |
| GSMUA_Achr7P01230_001 | Banana | nucleus | 45.7 | 32.7 |
| KRH21078 | Soybean | cytosol | 29.8 | 32.61 |
| CDX99884 | Canola | nucleus | 28.48 | 32.58 |
| Bra021923.1-P | Field mustard | cytosol | 25.17 | 32.48 |
| CDX84639 | Canola | nucleus | 24.5 | 32.46 |
| KRH11175 | Soybean | cytosol | 28.48 | 32.33 |
| PGSC0003DMT400022651 | Potato | mitochondrion, nucleus | 26.49 | 32.26 |
| CDY43664 | Canola | nucleus | 25.17 | 31.93 |
| CDY17268 | Canola | cytosol | 24.5 | 31.9 |
| CDX84301 | Canola | cytosol | 24.5 | 31.9 |
| Bra005407.1-P | Field mustard | cytosol | 24.5 | 31.9 |
| Solyc08g036660.2.1 | Tomato | mitochondrion | 26.49 | 31.5 |
| KRH42552 | Soybean | nucleus | 31.13 | 31.33 |
| CDX79568 | Canola | nucleus | 21.85 | 29.2 |
| AT2G34600.1 | Thale cress | nucleus | 27.15 | 27.7 |
| GSMUA_Achr3P23250_001 | Banana | cytosol | 27.15 | 23.03 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P31480_001 | EnsemblPlants:GSMUA_Achr4T31480_001 | EnsemblPlantsGene:GSMUA_Achr4G31480_001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF17 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SEG:seg |
| UniParc:UPI00029592A2 | UniProt:M0STR0 | MapMan:15.5.45 | : | : | : |
Description
Putative Protein TIFY 5A [Source:GMGC_GENE;Acc:GSMUA_Achr4G31480_001]
Coordinates
chr4:+:28690073..28690889
Molecular Weight (calculated)
17139.6 Da
IEP (calculated)
9.851
GRAVY (calculated)
-0.772
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMVDLRLRL GSSSGGGDDD EPSTASCNSR VARLFESSRE YHHQQQQPQQ ITLLYDGRIC ACDVTEMQAR AIIAMAKREM DGHMKKTTQA HRQPIESSLP
101: PSSPRPVERL LINPELSMKR SLQRFLHKRK SRLHALSPYG HGPQNLYSIK S
101: PSSPRPVERL LINPELSMKR SLQRFLHKRK SRLHALSPYG HGPQNLYSIK S
001: MKLQQNCDLE LRLFPTSYDS DSSDTTSVVE STSSGNPQPN EESQRITIFY NGKMCFSSDV THLQARSIIS IASREMKTKS SSNGSDPPNK STSFHHNQLP
101: NPKASMKKSL QSFLQKRKIR IQATSPYHSR R
101: NPKASMKKSL QSFLQKRKIR IQATSPYHSR R
Arabidopsis Description
TIFY5AProtein TIFY 5A [Source:UniProtKB/Swiss-Prot;Acc:Q8LBM2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.