Factsheet for Solyc08g036640.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g096050.2.1
Solyc05g050560.1.1
Solyc07g042170.2.1
Solyc08g005050.2.1
Solyc08g076930.1.1
Solyc12g009220.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30135.1	Solyc01g096050.2.1	AT1G01260.1	21798944
AT1G30135.1	Solyc05g050560.1.1	AT1G01260.1	21798944
AT1G30135.1	Solyc07g042170.2.1	AT1G19180.1	19309455
AT1G30135.1	Solyc12g009220.1.1	AT1G19180.1	19309455
AT1G30135.1	Solyc07g042170.2.1	AT1G19180.1	21798944
AT1G30135.1	Solyc12g009220.1.1	AT1G19180.1	21798944
AT1G30135.1	Solyc08g005050.2.1	AT1G32640.1	19309455
AT1G30135.1	Solyc08g076930.1.1	AT1G32640.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022650	Potato	cytosol	91.96	89.57
Solyc08g036620.2.1	Tomato	nucleus	72.32	78.64
Solyc08g036660.2.1	Tomato	mitochondrion	68.75	60.63
VIT_04s0008g00110.t01	Wine grape	cytosol	41.96	47.96
VIT_10s0003g03790.t01	Wine grape	cytosol	52.68	46.46
VIT_10s0003g03810.t01	Wine grape	nucleus	39.29	45.83
VIT_10s0003g03800.t01	Wine grape	cytosol	50.89	44.88
Bra021923.1-P	Field mustard	cytosol	46.43	44.44
CDY43664	Canola	nucleus	46.43	43.7
KRH58647	Soybean	cytosol	51.79	43.28
KRH11175	Soybean	cytosol	50.89	42.86
KRH21078	Soybean	cytosol	51.79	42.03
Bra022981.1-P	Field mustard	nucleus	41.07	40.71
KRH42552	Soybean	nucleus	54.46	40.67
CDX84301	Canola	cytosol	41.96	40.52
CDY17268	Canola	cytosol	41.96	40.52
Bra005407.1-P	Field mustard	cytosol	41.96	40.52
AT1G30135.1	Thale cress	nucleus	47.32	40.46
CDY51470	Canola	nucleus	46.43	40.0
CDX90230	Canola	nucleus	45.54	39.23
Bra010794.1-P	Field mustard	nucleus	45.54	39.23
CDX84639	Canola	nucleus	39.29	38.6
CDX79568	Canola	nucleus	37.5	37.17
CDX99884	Canola	nucleus	43.75	37.12
Bra032362.1-P	Field mustard	nucleus	43.75	36.84
CDY26288	Canola	nucleus	42.86	36.09
AT2G34600.1	Thale cress	nucleus	47.32	35.81
GSMUA_Achr9P10340_001	Banana	cytosol	40.18	35.43
GSMUA_Achr7P01220_001	Banana	extracellular	33.04	31.09
GSMUA_Achr6P31200_001	Banana	nucleus	39.29	29.53
GSMUA_Achr2P12970_001	Banana	cytosol	34.82	28.68
GSMUA_Achr4P31480_001	Banana	nucleus	36.61	27.15
GSMUA_Achr7P01230_001	Banana	nucleus	38.39	20.38
GSMUA_Achr3P23250_001	Banana	cytosol	25.89	16.29

Protein Annotations

MapMan:15.5.45	InterPro:CCT_CS	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009719	GO:GO:0009987
GO:GO:0031347	GO:GO:1903507	GO:GO:2000022	InterPro:IPR010399	UniProt:K4CK24	PFAM:PF06200
PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF17	SMART:SM00979	EnsemblPlantsGene:Solyc08g036640.2
EnsemblPlants:Solyc08g036640.2.1	InterPro:Tify_dom	UniParc:UPI000276C07A	:	:	:

Description

No Description!

Coordinates

chr8:+:10529083..10529763

Molecular Weight (calculated)

12823.5 Da

IEP (calculated)

10.343

GRAVY (calculated)

-0.762

Length

112 amino acids

Sequence
(BLAST)

001: MRRNCNLELT LMPPSISDNF SSKNCTTEDQ QLENKQSQQL TIFYHGKFVV SDATELQAKA IIYLASRGME MKTNKMSEPS SPLLQPQTVK KSLQGFLQKR
101: KKRVQATSPY HK

Best Arabidopsis Sequence Match ( AT1G30135.1 )
(BLAST)

001: MKLQQNCDLE LRLFPTSYDS DSSDTTSVVE STSSGNPQPN EESQRITIFY NGKMCFSSDV THLQARSIIS IASREMKTKS SSNGSDPPNK STSFHHNQLP
101: NPKASMKKSL QSFLQKRKIR IQATSPYHSR R

Arabidopsis Description

TIFY5AProtein TIFY 5A [Source:UniProtKB/Swiss-Prot;Acc:Q8LBM2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.