Factsheet for Solyc08g076930.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g118540.2.1
Solyc06g068930.1.1
Solyc07g042170.2.1
Solyc08g036620.2.1
Solyc08g036640.2.1
Solyc08g036660.2.1
Solyc12g009220.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32640.1	Solyc07g042170.2.1	AT1G19180.1	18547396
AT1G32640.1	Solyc12g009220.1.1	AT1G19180.1	18547396
AT1G32640.1	Solyc08g036620.2.1	AT1G30135.1	19309455
AT1G32640.1	Solyc08g036640.2.1	AT1G30135.1	19309455
AT1G32640.1	Solyc08g036660.2.1	AT1G30135.1	19309455
AT1G32640.1	Solyc03g118540.2.1	AT1G48500.1	19309455
AT1G32640.1	Solyc06g068930.1.1	AT1G48500.1	19309455
AT1G32640.1	Solyc03g118540.2.1	AT3G17860.1	17637675
AT1G32640.1	Solyc06g068930.1.1	AT3G17860.1	17637675

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045204	Potato	nucleus	94.63	93.95
Solyc08g005050.2.1	Tomato	nucleus	51.23	76.08
VIT_02s0012g01320.t01	Wine grape	nucleus	67.05	69.68
Bra017527.1-P	Field mustard	nucleus	22.06	67.26
CDY58502	Canola	nucleus	41.07	63.03
CDX77688	Canola	nucleus	40.93	62.39
KRH75613	Soybean	nucleus	57.47	62.17
Bra013263.1-P	Field mustard	nucleus	24.38	61.99
CDX73261	Canola	nucleus	39.19	60.95
CDY26910	Canola	nucleus	39.19	60.95
KRH74418	Soybean	nucleus	56.6	60.75
KRH45440	Soybean	nucleus	56.31	59.33
Bra010178.1-P	Field mustard	nucleus	51.38	59.0
CDY03195	Canola	nucleus	46.44	58.72
CDX84081	Canola	nucleus	44.27	57.66
AT1G32640.1	Thale cress	nucleus	51.67	57.14
AT4G17880.1	Thale cress	nucleus	48.77	57.05
CDY35179	Canola	nucleus	46.44	56.94
Bra024998.1-P	Field mustard	nucleus	47.31	56.21
CDX78808	Canola	nucleus	46.59	55.44
CDY44507	Canola	nucleus	46.44	54.61
KRH39540	Soybean	nucleus	57.62	54.31
AT5G46760.1	Thale cress	nucleus	46.59	54.22
HORVU1Hr1G050560.1	Barley	nucleus	51.09	51.46
TraesCS1B01G208000.1	Wheat	nucleus	50.94	50.65
TraesCS1D01G196900.1	Wheat	nucleus	50.8	50.36
Os10t0575000-01	Rice	nucleus	50.8	50.07
Zm00001d030028_P001	Maize	nucleus	50.94	49.79
Bra013264.1-P	Field mustard	nucleus	21.34	49.49
CDY03185	Canola	nucleus	33.82	49.26
KXG39194	Sorghum	nucleus	50.36	49.08
TraesCS1A01G193200.1	Wheat	nucleus	49.2	48.92
Zm00001d047017_P001	Maize	nucleus	49.78	48.79
CDY59973	Canola	nucleus	35.27	47.74
Bra017520.1-P	Field mustard	nucleus	34.4	47.59
CDY35183	Canola	nucleus	34.69	47.14
CDY03183	Canola	nucleus	34.69	46.95
Bra017523.1-P	Field mustard	nucleus	34.54	46.94
CDX77696	Canola	nucleus	8.13	46.67
AT5G46830.1	Thale cress	nucleus	33.82	45.6
Bra024992.1-P	Field mustard	nucleus	17.71	45.02
CDY33482	Canola	nucleus	17.56	44.65
CDX77699	Canola	nucleus	17.42	44.28
Bra024993.1-P	Field mustard	nucleus	23.95	43.77
Solyc10g009290.1.1	Tomato	nucleus	26.56	40.58
Solyc01g096370.2.1	Tomato	nucleus	25.4	38.89
Solyc10g009270.2.1	Tomato	nucleus	21.19	37.15
HORVU0Hr1G025420.1	Barley	cytosol, nucleus	8.71	36.59
Zm00001d052728_P001	Maize	nucleus	14.22	35.64
Solyc08g083170.1.1	Tomato	extracellular	19.74	35.14
Solyc08g008600.2.1	Tomato	nucleus	22.93	34.96
TraesCS5D01G313500.1	Wheat	nucleus	14.08	34.77
Zm00001d031717_P001	Maize	nucleus	12.77	34.65
KXG25462	Sorghum	nucleus	13.93	34.53
TraesCS5A01G306500.1	Wheat	nucleus	14.08	34.52
TraesCS5A01G306200.1	Wheat	nucleus	13.93	34.41
TraesCS5B01G307000.1	Wheat	nucleus	13.93	34.41
TraesCS5D01G313600.1	Wheat	nucleus	13.93	34.41
TraesCS5A01G306400.1	Wheat	nucleus	11.03	34.08
OQU86344	Sorghum	nucleus	12.63	33.98
TraesCS5B01G306800.1	Wheat	nucleus	13.5	33.21
OQU75588	Sorghum	nucleus	12.63	33.08
OQU80776	Sorghum	nucleus	12.63	33.08
TraesCS1D01G374800.1	Wheat	nucleus	12.63	32.83
TraesCS1A01G369200.1	Wheat	nucleus	9.43	32.83
TraesCS7D01G102200.1	Wheat	nucleus	12.05	32.42
TraesCS5D01G313700.1	Wheat	nucleus	12.92	32.36
EER97058	Sorghum	cytosol, nucleus, plastid	12.92	32.25
TraesCS5B01G306600.1	Wheat	nucleus	12.77	32.23
OQU80778	Sorghum	nucleus	12.63	32.22
TraesCS5A01G306700.1	Wheat	peroxisome	12.77	32.12
TraesCS2B01G469200.1	Wheat	nucleus	11.47	32.11
TraesCSU01G222600.1	Wheat	nucleus	11.47	32.11
HORVU5Hr1G080040.1	Barley	nucleus	12.48	32.09
TraesCS2A01G448500.1	Wheat	nucleus	11.9	32.03
TraesCS5B01G307100.1	Wheat	nucleus	12.63	31.87
HORVU5Hr1G079900.1	Barley	cytosol	12.48	31.85
TraesCS2B01G469300.1	Wheat	nucleus	11.76	31.64
Os08t0543700-00	Rice	nucleus, peroxisome, plastid	12.05	31.56
TraesCS5D01G313400.1	Wheat	nucleus	12.48	31.5
Os09t0519100-00	Rice	nucleus	12.05	31.44
HORVU5Hr1G080080.1	Barley	nucleus, plastid	9.58	31.43
TraesCS5A01G306600.1	Wheat	nucleus	12.48	31.27
Solyc06g083980.1.1	Tomato	nucleus	21.63	31.24
Zm00001d006150_P001	Maize	nucleus	13.06	30.93
OQU80775	Sorghum	cytosol, nucleus, peroxisome, plastid	12.48	30.82
Solyc01g096050.2.1	Tomato	nucleus	27.0	30.74
OQU80777	Sorghum	nucleus	12.48	30.71
EER99201	Sorghum	nucleus	13.06	30.41
Zm00001d021164_P001	Maize	nucleus	12.77	30.34
TraesCS1B01G387900.1	Wheat	nucleus	10.45	30.13
Solyc05g050560.1.1	Tomato	nucleus	25.25	30.05
Solyc01g106460.2.1	Tomato	nucleus	7.98	22.63
Solyc06g064590.1.1	Tomato	nucleus	9.0	22.06
Solyc06g064580.1.1	Tomato	nucleus	9.14	20.72
Solyc05g009640.2.1	Tomato	cytosol, nucleus, peroxisome	6.68	19.66
Solyc08g081140.2.1	Tomato	nucleus	17.85	19.65
Solyc09g065100.1.1	Tomato	nucleus	19.16	19.41
Solyc02g091820.1.1	Tomato	nucleus	9.14	19.33
Solyc02g091810.1.1	Tomato	nucleus	8.85	19.18
Solyc02g091800.2.1	Tomato	nucleus	8.71	17.29

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:K4CN53	InterPro:MYC/MYB_N
PFAM:PF00010	PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF43	SMART:SM00353
SUPFAM:SSF47459	EnsemblPlantsGene:Solyc08g076930.1	EnsemblPlants:Solyc08g076930.1.1	UniParc:UPI000276C0BA	InterPro:bHLH_dom	SEG:seg

Description

No Description!

Coordinates

chr8:+:60869870..60871939

Molecular Weight (calculated)

75045.1 Da

IEP (calculated)

5.451

GRAVY (calculated)

-0.598

Length

689 amino acids

Sequence
(BLAST)

001: MTEYSLPTMN LWNNSTSDDN VSMMEAFMSS DLSFWATNNS TSAAVVGVNS NLPHASSNTP SVFAPSSSTS ASTLSAAATV DASKSMPFFN QETLQQRLQA
101: LIDGARETWT YAIFWQSSVV DFSSPSVLGW GDGYYKGEED KAKRKLSVSS PAYIAEQEHR KKVLRELNSL ISGAPPGTDD AVDEEVTDTE WFFLISMTQS
201: FVNGSGLPGQ ALYSSSPIWV AGTEKLAASH CERVRQAQGF GLQTIVCIPS ANGVVELGST ELIVQSSDLM NKVRVLFNFS NDLGSGSWAV QPESDPSALW
301: LTDPSSSGME VRESLNTVQT NSVPSSNSNK QIAYGNENNH PSGNGQSCYN QQQQKNPPQQ QTQGFFTREL NFSEFGFDGS SNRNGNSSVS CKPESGEILN
401: FGDSTKKSAS SANVNLFTGQ SQFGAGEENN NKNKKRSATS RGSNEEGMLS FVSGTVLPSS GMKSGGGGGE DSEHSDLEAS VVKEADSSRV VEPEKRPRKR
501: GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNVS KMDKASLLGD AISYINELKS KLQNTESDKE DLKSQIEDLK KESRRPGPPP PPNQDLKMSS
601: HTGGKIVDVD IDVKIIGWDA MIRIQCNKKN HPAARLMAAL MELDLDVHHA SVSVVNDLMI QQATVKMGSR HYTEEQLRVA LTSKIAETH

Best Arabidopsis Sequence Match ( AT1G32640.1 )
(BLAST)

001: MTDYRLQPTM NLWTTDDNAS MMEAFMSSSD ISTLWPPAST TTTTATTETT PTPAMEIPAQ AGFNQETLQQ RLQALIEGTH EGWTYAIFWQ PSYDFSGASV
101: LGWGDGYYKG EEDKANPRRR SSSPPFSTPA DQEYRKKVLR ELNSLISGGV APSDDAVDEE VTDTEWFFLV SMTQSFACGA GLAGKAFATG NAVWVSGSDQ
201: LSGSGCERAK QGGVFGMHTI ACIPSANGVV EVGSTEPIRQ SSDLINKVRI LFNFDGGAGD LSGLNWNLDP DQGENDPSMW INDPIGTPGS NEPGNGAPSS
301: SSQLFSKSIQ FENGSSSTIT ENPNLDPTPS PVHSQTQNPK FNNTFSRELN FSTSSSTLVK PRSGEILNFG DEGKRSSGNP DPSSYSGQTQ FENKRKRSMV
401: LNEDKVLSFG DKTAGESDHS DLEASVVKEV AVEKRPKKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNVSK MDKASLLGDA IAYINELKSK
501: VVKTESEKLQ IKNQLEEVKL ELAGRKASAS GGDMSSSCSS IKPVGMEIEV KIIGWDAMIR VESSKRNHPA ARLMSALMDL ELEVNHASMS VVNDLMIQQA
601: TVKMGFRIYT QEQLRASLIS KIG

Arabidopsis Description

MYC2ZBF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W7C3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.