Factsheet for TraesCS1B01G387900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G169300.1
TraesCS2A01G506500.1
TraesCS2B01G195600.1
TraesCS2B01G534800.1
TraesCS2D01G176800.1
TraesCS2D01G507200.1
TraesCS4B01G364700.1
TraesCS5A01G204900.1
TraesCS5A01G212800.1
TraesCS5A01G533000.1
TraesCS5A01G533100.1
TraesCS5B01G203400.2
TraesCS5B01G211000.1
TraesCS5D01G211200.2
TraesCS5D01G219300.2
TraesCSU01G139000.1
TraesCSU01G139100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32640.1	TraesCS2A01G169300.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS2B01G195600.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS2D01G176800.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5A01G212800.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5B01G211000.1	AT1G19180.1	18547396
AT1G32640.1	TraesCS5D01G219300.2	AT1G19180.1	18547396
AT1G32640.1	TraesCS4B01G364700.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G204900.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G533000.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5A01G533100.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS5B01G203400.2	AT1G48500.1	19309455
AT1G32640.1	TraesCS5D01G211200.2	AT1G48500.1	19309455
AT1G32640.1	TraesCSU01G139000.1	AT1G48500.1	19309455
AT1G32640.1	TraesCSU01G139100.1	AT1G48500.1	19309455
AT1G32640.1	TraesCS4B01G364700.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G204900.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G533000.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5A01G533100.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS5B01G203400.2	AT3G17860.1	17637675
AT1G32640.1	TraesCS5D01G211200.2	AT3G17860.1	17637675
AT1G32640.1	TraesCSU01G139000.1	AT3G17860.1	17637675
AT1G32640.1	TraesCSU01G139100.1	AT3G17860.1	17637675
AT1G32640.1	TraesCS2A01G506500.1	AT3G43440.1	19309455
AT1G32640.1	TraesCS2B01G534800.1	AT3G43440.1	19309455
AT1G32640.1	TraesCS2D01G507200.1	AT3G43440.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G469200.1	Wheat	nucleus	71.55	69.51
TraesCS2B01G469300.1	Wheat	nucleus	74.06	69.14
TraesCS5B01G307000.1	Wheat	nucleus	59.83	51.25
TraesCS5B01G306800.1	Wheat	nucleus	57.74	49.29
TraesCS5B01G307100.1	Wheat	nucleus	52.72	46.15
TraesCS5B01G306600.1	Wheat	nucleus	52.72	46.15
Bra017527.1-P	Field mustard	nucleus	25.1	26.55
Bra013263.1-P	Field mustard	nucleus	23.43	20.66
Bra024992.1-P	Field mustard	nucleus	22.59	19.93
VIT_02s0025g02610.t01	Wine grape	nucleus	28.45	18.84
KRH47834	Soybean	nucleus	35.98	18.53
PGSC0003DMT400014089	Potato	nucleus	29.71	18.49
CDY70013	Canola	nucleus	19.25	18.25
PGSC0003DMT400028057	Potato	nucleus	29.71	18.25
KRH06400	Soybean	nucleus	35.56	18.24
Solyc08g083170.1.1	Tomato	extracellular	29.29	18.09
Solyc10g009270.2.1	Tomato	nucleus	29.71	18.07
Solyc10g009290.1.1	Tomato	nucleus	33.47	17.74
PGSC0003DMT400047220	Potato	nucleus	33.47	17.7
Solyc01g096370.2.1	Tomato	nucleus	33.05	17.56
AT4G00870.1	Thale cress	nucleus, plastid	30.96	17.49
VIT_15s0048g02820.t01	Wine grape	nucleus	35.56	17.1
PGSC0003DMT400031899	Potato	plastid	30.54	16.94
PGSC0003DMT400014097	Potato	nucleus	31.8	16.63
Bra017520.1-P	Field mustard	nucleus	30.13	14.46
PGSC0003DMT400015017	Potato	nucleus	27.2	14.25
Solyc08g008600.2.1	Tomato	nucleus	26.78	14.16
Bra017523.1-P	Field mustard	nucleus	29.71	14.0
AT5G46830.1	Thale cress	nucleus	29.71	13.89
Bra024998.1-P	Field mustard	nucleus	31.38	12.93
TraesCS3B01G288700.1	Wheat	nucleus	23.85	12.87
AT5G46760.1	Thale cress	nucleus	31.8	12.84
VIT_02s0012g01320.t01	Wine grape	nucleus	35.56	12.82
TraesCS4B01G308200.1	Wheat	nucleus	18.41	12.22
AT4G17880.1	Thale cress	nucleus	29.71	12.05
TraesCS4B01G020900.1	Wheat	nucleus	18.41	11.89
PGSC0003DMT400002963	Potato	nucleus	29.71	11.87
TraesCS4B01G021100.1	Wheat	nucleus	17.99	11.85
TraesCS4B01G308300.1	Wheat	nucleus	17.99	11.81
TraesCS3B01G284800.1	Wheat	nucleus	23.43	11.79
TraesCS4B01G335200.1	Wheat	nucleus	12.13	11.79
TraesCS4B01G020700.1	Wheat	nucleus	17.99	11.78
KRH75613	Soybean	nucleus	31.38	11.77
KRH45440	Soybean	nucleus	32.22	11.77
AT1G32640.1	Thale cress	nucleus	30.54	11.72
TraesCS5B01G518400.1	Wheat	nucleus	15.9	11.69
Bra010178.1-P	Field mustard	nucleus	29.29	11.67
TraesCS4B01G308100.1	Wheat	nucleus	16.74	11.53
Bra024993.1-P	Field mustard	nucleus	17.99	11.41
KRH74418	Soybean	nucleus	30.54	11.37
TraesCS4B01G021500.1	Wheat	nucleus	16.74	11.2
TraesCS1B01G208000.1	Wheat	nucleus	32.22	11.11
TraesCS4B01G021200.1	Wheat	nucleus	17.15	11.11
TraesCS4B01G234700.1	Wheat	nucleus	13.81	10.96
TraesCS4B01G056600.2	Wheat	nucleus	17.15	10.96
Solyc08g005050.2.1	Tomato	nucleus	20.92	10.78
TraesCS5B01G518500.1	Wheat	nucleus	14.64	10.77
Solyc08g076930.1.1	Tomato	nucleus	30.13	10.45
PGSC0003DMT400045204	Potato	nucleus	30.13	10.37
TraesCS4B01G391500.1	Wheat	nucleus	13.81	10.28
TraesCS5B01G518800.1	Wheat	nucleus	13.39	10.16
KRH39540	Soybean	nucleus	30.96	10.12
TraesCS3B01G029800.1	Wheat	nucleus	13.81	10.06
TraesCS5B01G013000.2	Wheat	nucleus	15.06	9.52
TraesCS4B01G345800.1	Wheat	nucleus	12.13	9.32
TraesCS4B01G276900.1	Wheat	nucleus	23.01	9.2
TraesCS4B01G397300.1	Wheat	nucleus	15.06	8.85
TraesCS3B01G185400.1	Wheat	nucleus	22.59	8.64
TraesCS4B01G397400.1	Wheat	nucleus	19.25	8.16
TraesCS2B01G428000.1	Wheat	nucleus	18.83	7.85
TraesCS7B01G483600.1	Wheat	nucleus	10.46	7.79
TraesCS1B01G112900.1	Wheat	nucleus	19.25	7.29
TraesCS1B01G113100.4	Wheat	nucleus	19.67	6.83
Bra013264.1-P	Field mustard	nucleus	8.37	6.73
TraesCS4B01G397800.1	Wheat	nucleus	13.39	6.27
CDY70012	Canola	nucleus	5.86	5.24

Protein Annotations

EnsemblPlants:TraesCS1B01G387900.1	EnsemblPlantsGene:TraesCS1B01G387900	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR11514	PANTHER:PTHR11514:SF68	PFscan:PS50888	SEG:seg	SUPFAM:SSF47459	TIGR:cd00083
MapMan:15.5.32	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:622070612..622071551

Molecular Weight (calculated)

25678.3 Da

IEP (calculated)

4.807

GRAVY (calculated)

-0.208

Length

239 amino acids

Sequence
(BLAST)

001: MDNLLSPSSC FLPPSASSQF STVGQHVVEF VPLLHEQWPF DDGTMSQNED RELWAPMGST LPRSPELSEL PSSVTATPLS NGRAAGRDKL DRRFCDLRAV
101: VPNVSRMDKA SLLADAATYI GELRTRVAHL EDEANKTLEK GAAAAASRGG TASKFLQVDE TVDVRMVGRD GAAVRVTTTA THAPAQLMGA LRSLELQVQH
201: ACVSHVQGVT LQDVLVDVPT SMQDADDLRS ALLQALQDS

Best Arabidopsis Sequence Match ( AT1G32640.1 )
(BLAST)

001: MTDYRLQPTM NLWTTDDNAS MMEAFMSSSD ISTLWPPAST TTTTATTETT PTPAMEIPAQ AGFNQETLQQ RLQALIEGTH EGWTYAIFWQ PSYDFSGASV
101: LGWGDGYYKG EEDKANPRRR SSSPPFSTPA DQEYRKKVLR ELNSLISGGV APSDDAVDEE VTDTEWFFLV SMTQSFACGA GLAGKAFATG NAVWVSGSDQ
201: LSGSGCERAK QGGVFGMHTI ACIPSANGVV EVGSTEPIRQ SSDLINKVRI LFNFDGGAGD LSGLNWNLDP DQGENDPSMW INDPIGTPGS NEPGNGAPSS
301: SSQLFSKSIQ FENGSSSTIT ENPNLDPTPS PVHSQTQNPK FNNTFSRELN FSTSSSTLVK PRSGEILNFG DEGKRSSGNP DPSSYSGQTQ FENKRKRSMV
401: LNEDKVLSFG DKTAGESDHS DLEASVVKEV AVEKRPKKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNVSK MDKASLLGDA IAYINELKSK
501: VVKTESEKLQ IKNQLEEVKL ELAGRKASAS GGDMSSSCSS IKPVGMEIEV KIIGWDAMIR VESSKRNHPA ARLMSALMDL ELEVNHASMS VVNDLMIQQA
601: TVKMGFRIYT QEQLRASLIS KIG

Arabidopsis Description

MYC2ZBF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W7C3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.