Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G518400.1 | Wheat | nucleus | 74.29 | 72.0 |
| TraesCSU01G075100.1 | Wheat | nucleus | 75.24 | 70.12 |
| HORVU0Hr1G014300.1 | Barley | nucleus | 72.38 | 69.09 |
| TraesCS5B01G518500.1 | Wheat | nucleus | 68.89 | 66.77 |
| TraesCS4B01G020700.1 | Wheat | nucleus | 56.83 | 49.04 |
| EER93684 | Sorghum | nucleus | 48.89 | 40.0 |
| Zm00001d033407_P001 | Maize | nucleus | 44.76 | 39.61 |
| Os03t0671800-01 | Rice | nucleus | 47.3 | 38.7 |
| TraesCS4B01G021500.1 | Wheat | nucleus | 42.54 | 37.53 |
| TraesCS4B01G308100.1 | Wheat | nucleus | 40.63 | 36.89 |
| TraesCS3B01G029800.1 | Wheat | nucleus | 38.1 | 36.59 |
| TraesCS4B01G020900.1 | Wheat | nucleus | 42.86 | 36.49 |
| TraesCS4B01G021100.1 | Wheat | nucleus | 41.9 | 36.36 |
| TraesCS4B01G308300.1 | Wheat | nucleus | 41.27 | 35.71 |
| TraesCS4B01G308200.1 | Wheat | nucleus | 40.63 | 35.56 |
| TraesCS4B01G021200.1 | Wheat | nucleus | 41.59 | 35.5 |
| TraesCS7B01G483600.1 | Wheat | nucleus | 32.7 | 32.09 |
| TraesCS5B01G013000.2 | Wheat | nucleus | 37.46 | 31.22 |
| TraesCS4B01G056600.2 | Wheat | nucleus | 31.75 | 26.74 |
| TraesCS4B01G345800.1 | Wheat | nucleus | 26.03 | 26.37 |
| TraesCS4B01G234700.1 | Wheat | nucleus | 24.44 | 25.58 |
| TraesCS4B01G391500.1 | Wheat | nucleus | 25.08 | 24.61 |
| TraesCS4B01G335200.1 | Wheat | nucleus | 13.65 | 17.48 |
| TraesCS2B01G469200.1 | Wheat | nucleus | 12.7 | 16.26 |
| TraesCS2B01G469300.1 | Wheat | nucleus | 12.7 | 15.62 |
| TraesCS5B01G307000.1 | Wheat | nucleus | 13.02 | 14.7 |
| TraesCS1B01G387900.1 | Wheat | nucleus | 10.16 | 13.39 |
| TraesCS5B01G306600.1 | Wheat | nucleus | 11.43 | 13.19 |
| TraesCS5B01G307100.1 | Wheat | nucleus | 11.43 | 13.19 |
| TraesCS5B01G306800.1 | Wheat | nucleus | 11.43 | 12.86 |
| TraesCS3B01G288700.1 | Wheat | nucleus | 14.29 | 10.16 |
| TraesCS4B01G397300.1 | Wheat | nucleus | 13.02 | 10.07 |
| TraesCS3B01G284800.1 | Wheat | nucleus | 14.92 | 9.89 |
| TraesCS3B01G185400.1 | Wheat | nucleus | 17.14 | 8.64 |
| TraesCS4B01G276900.1 | Wheat | nucleus | 16.19 | 8.53 |
| TraesCS1B01G112900.1 | Wheat | nucleus | 16.83 | 8.4 |
| TraesCS1B01G208000.1 | Wheat | nucleus | 18.41 | 8.37 |
| TraesCS4B01G397400.1 | Wheat | nucleus | 14.92 | 8.33 |
| TraesCS2B01G428000.1 | Wheat | nucleus | 14.92 | 8.2 |
| TraesCS1B01G113100.4 | Wheat | nucleus | 17.14 | 7.85 |
| TraesCS4B01G397800.1 | Wheat | nucleus | 12.06 | 7.45 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G518800.1 | EnsemblPlantsGene:TraesCS5B01G518800 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF74 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | MapMan:25.4.1.7 | : | : |
Description
No Description!
Coordinates
chr5B:+:681737627..681740186
Molecular Weight (calculated)
33972.3 Da
IEP (calculated)
8.002
GRAVY (calculated)
-0.379
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSSIFIQW AMEALGQGQD AAVAGDAFSS SPFLEPHHSA ALQSGTDMAA HRYGATDDSR SSGNSGAALA KENNGWSSNC STNYPAVSPN FTSGSVAPPS
101: HGVPEPAHRS PPSRKSSPSN NGTASTGQEH VMAERKRREK LNRHFIEHST VIPGLKKMDK TTILSDAVRY VKEQQEKLKA LQDRDKRIID SVVLVKRPCI
201: SNVDHGSPSP PPSAVARTSP TLAKKTLLPE IDARILEGNV MVKIHCEDGK RVLVTLLAEV EGLHLTITHA NVMSFPASTL IINLMAKVDE GFNITVEDIV
301: CKLHSALRPC HHIGK
101: HGVPEPAHRS PPSRKSSPSN NGTASTGQEH VMAERKRREK LNRHFIEHST VIPGLKKMDK TTILSDAVRY VKEQQEKLKA LQDRDKRIID SVVLVKRPCI
201: SNVDHGSPSP PPSAVARTSP TLAKKTLLPE IDARILEGNV MVKIHCEDGK RVLVTLLAEV EGLHLTITHA NVMSFPASTL IINLMAKVDE GFNITVEDIV
301: CKLHSALRPC HHIGK
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.