Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G019200.1 | Wheat | nucleus | 90.48 | 89.72 |
| HORVU4Hr1G003210.1 | Barley | nucleus | 87.68 | 85.75 |
| TraesCS4B01G020900.1 | Wheat | nucleus | 87.39 | 84.32 |
| TraesCS4B01G021100.1 | Wheat | nucleus | 85.15 | 83.75 |
| TraesCS4B01G021200.1 | Wheat | nucleus | 86.27 | 83.47 |
| Zm00001d038966_P001 | Maize | plastid | 33.33 | 58.33 |
| Zm00001d026009_P001 | Maize | plastid | 32.77 | 57.35 |
| KXG37866 | Sorghum | nucleus | 56.3 | 54.18 |
| EES10849 | Sorghum | nucleus | 50.42 | 52.17 |
| TraesCS4B01G308100.1 | Wheat | nucleus | 48.46 | 49.86 |
| TraesCS3B01G029800.1 | Wheat | nucleus | 45.38 | 49.39 |
| TraesCS4B01G308200.1 | Wheat | nucleus | 49.58 | 49.17 |
| Zm00001d003604_P001 | Maize | nucleus | 45.94 | 48.81 |
| TraesCS4B01G308300.1 | Wheat | nucleus | 49.58 | 48.63 |
| Zm00001d033413_P001 | Maize | nucleus | 43.14 | 48.43 |
| EER93685 | Sorghum | mitochondrion | 49.58 | 47.58 |
| Zm00001d025462_P001 | Maize | nucleus | 43.98 | 47.58 |
| Zm00001d033412_P001 | Maize | nucleus | 49.02 | 47.43 |
| TraesCS5B01G518400.1 | Wheat | nucleus | 42.86 | 47.08 |
| TraesCS4B01G020700.1 | Wheat | nucleus | 47.34 | 46.3 |
| TraesCS5B01G518500.1 | Wheat | nucleus | 40.06 | 44.0 |
| TraesCS5B01G518800.1 | Wheat | nucleus | 37.53 | 42.54 |
| Zm00001d024781_P001 | Maize | nucleus | 41.74 | 42.21 |
| TraesCS5B01G013000.2 | Wheat | nucleus | 42.86 | 40.48 |
| OQU75589 | Sorghum | nucleus | 41.46 | 38.44 |
| TraesCS7B01G483600.1 | Wheat | nucleus | 34.45 | 38.32 |
| OQU77369 | Sorghum | nucleus | 44.82 | 38.1 |
| TraesCS4B01G345800.1 | Wheat | nucleus | 25.21 | 28.94 |
| TraesCS4B01G234700.1 | Wheat | nucleus | 24.09 | 28.57 |
| TraesCS4B01G056600.2 | Wheat | nucleus | 28.57 | 27.27 |
| TraesCS4B01G391500.1 | Wheat | nucleus | 23.25 | 25.86 |
| TraesCS4B01G335200.1 | Wheat | nucleus | 15.41 | 22.36 |
| TraesCS5B01G307000.1 | Wheat | nucleus | 15.13 | 19.35 |
| TraesCS5B01G307100.1 | Wheat | nucleus | 14.57 | 19.05 |
| TraesCS2B01G469200.1 | Wheat | nucleus | 12.89 | 18.7 |
| TraesCS2B01G469300.1 | Wheat | nucleus | 12.89 | 17.97 |
| TraesCS5B01G306600.1 | Wheat | nucleus | 13.73 | 17.95 |
| TraesCS5B01G306800.1 | Wheat | nucleus | 14.01 | 17.86 |
| TraesCS1B01G387900.1 | Wheat | nucleus | 11.2 | 16.74 |
| TraesCS3B01G288700.1 | Wheat | nucleus | 15.13 | 12.19 |
| TraesCS3B01G284800.1 | Wheat | nucleus | 14.85 | 11.16 |
| TraesCS4B01G397300.1 | Wheat | nucleus | 12.04 | 10.57 |
| TraesCS4B01G397400.1 | Wheat | nucleus | 15.69 | 9.93 |
| TraesCS4B01G276900.1 | Wheat | nucleus | 16.53 | 9.87 |
| TraesCS1B01G208000.1 | Wheat | nucleus | 19.05 | 9.81 |
| TraesCS2B01G428000.1 | Wheat | nucleus | 15.41 | 9.6 |
| TraesCS1B01G112900.1 | Wheat | nucleus | 16.25 | 9.19 |
| TraesCS3B01G185400.1 | Wheat | nucleus | 15.97 | 9.12 |
| TraesCS4B01G397800.1 | Wheat | nucleus | 12.61 | 8.82 |
| TraesCS1B01G113100.4 | Wheat | nucleus | 16.53 | 8.58 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G021500.1 | EnsemblPlantsGene:TraesCS4B01G021500 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF74 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | MapMan:25.4.1.7 | : | : |
Description
No Description!
Coordinates
chr4B:-:15427017..15431870
Molecular Weight (calculated)
37632.4 Da
IEP (calculated)
5.014
GRAVY (calculated)
-0.179
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDLALFMEW AMDSLEQEHP DPVVVVSGDS GDAAFPSLQA LREQRLVFEE LITGANPASS GSSGETTDGS GGYGGNFSSP AAMEHDVWPL SPNSARCAPR
101: LCRNGAGTSL PVMSWNFSAL PASDGTLDSG SAGPVVPETG SQPTRRAAAR SPTGTGPVSS GPPYAQDHIM AERKRREKIN QRFIELSTVI PGLKKMDKAT
201: ILSDATRHVK ELQEKIKALE AATGRGSRSI ETVVLVKKPC YAAVADENGS PSSASSGAPA SRNPLPEIEV RFSETGVMVR ILCAAAKGVV VRVLSEVEEG
301: LHLTVTHANV MPFTACTVII TITAKVDDGF TVTAEEIVGR LNSVVELHSS CTSTEEK
101: LCRNGAGTSL PVMSWNFSAL PASDGTLDSG SAGPVVPETG SQPTRRAAAR SPTGTGPVSS GPPYAQDHIM AERKRREKIN QRFIELSTVI PGLKKMDKAT
201: ILSDATRHVK ELQEKIKALE AATGRGSRSI ETVVLVKKPC YAAVADENGS PSSASSGAPA SRNPLPEIEV RFSETGVMVR ILCAAAKGVV VRVLSEVEEG
301: LHLTVTHANV MPFTACTVII TITAKVDDGF TVTAEEIVGR LNSVVELHSS CTSTEEK
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.