Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G518400.1 | Wheat | nucleus | 82.46 | 82.46 |
| HORVU0Hr1G014300.1 | Barley | nucleus | 73.85 | 72.73 |
| TraesCS5B01G518800.1 | Wheat | nucleus | 66.77 | 68.89 |
| TraesCS4B01G020700.1 | Wheat | nucleus | 56.0 | 49.86 |
| Zm00001d033407_P001 | Maize | nucleus | 45.23 | 41.29 |
| EER93684 | Sorghum | nucleus | 47.69 | 40.26 |
| TraesCS4B01G021500.1 | Wheat | nucleus | 44.0 | 40.06 |
| Os03t0671800-01 | Rice | nucleus | 47.08 | 39.74 |
| TraesCS4B01G021100.1 | Wheat | nucleus | 44.31 | 39.67 |
| TraesCS4B01G020900.1 | Wheat | nucleus | 44.0 | 38.65 |
| TraesCS4B01G308100.1 | Wheat | nucleus | 41.23 | 38.62 |
| TraesCS3B01G029800.1 | Wheat | nucleus | 38.46 | 38.11 |
| TraesCS4B01G308200.1 | Wheat | nucleus | 42.15 | 38.06 |
| TraesCS4B01G308300.1 | Wheat | nucleus | 42.46 | 37.91 |
| TraesCS4B01G021200.1 | Wheat | nucleus | 42.77 | 37.67 |
| TraesCS5B01G013000.2 | Wheat | nucleus | 38.15 | 32.8 |
| TraesCS7B01G483600.1 | Wheat | nucleus | 32.0 | 32.4 |
| TraesCS4B01G056600.2 | Wheat | nucleus | 31.38 | 27.27 |
| TraesCS4B01G345800.1 | Wheat | nucleus | 25.85 | 27.01 |
| TraesCS4B01G234700.1 | Wheat | nucleus | 24.92 | 26.91 |
| TraesCS4B01G391500.1 | Wheat | nucleus | 24.92 | 25.23 |
| TraesCS4B01G335200.1 | Wheat | nucleus | 13.54 | 17.89 |
| TraesCS5B01G307000.1 | Wheat | nucleus | 14.15 | 16.49 |
| TraesCS2B01G469200.1 | Wheat | nucleus | 12.31 | 16.26 |
| TraesCS5B01G306800.1 | Wheat | nucleus | 13.54 | 15.71 |
| TraesCS2B01G469300.1 | Wheat | nucleus | 12.31 | 15.62 |
| TraesCS5B01G306600.1 | Wheat | nucleus | 12.62 | 15.02 |
| TraesCS5B01G307100.1 | Wheat | nucleus | 12.62 | 15.02 |
| TraesCS1B01G387900.1 | Wheat | nucleus | 10.77 | 14.64 |
| TraesCS3B01G288700.1 | Wheat | nucleus | 15.08 | 11.06 |
| TraesCS3B01G284800.1 | Wheat | nucleus | 15.38 | 10.53 |
| TraesCS4B01G397300.1 | Wheat | nucleus | 12.92 | 10.32 |
| TraesCS1B01G208000.1 | Wheat | nucleus | 19.08 | 8.95 |
| TraesCS1B01G112900.1 | Wheat | nucleus | 17.23 | 8.87 |
| TraesCS2B01G428000.1 | Wheat | nucleus | 15.38 | 8.73 |
| TraesCS4B01G276900.1 | Wheat | nucleus | 15.69 | 8.53 |
| TraesCS4B01G397400.1 | Wheat | nucleus | 14.77 | 8.51 |
| TraesCS1B01G113100.4 | Wheat | nucleus | 17.85 | 8.43 |
| TraesCS3B01G185400.1 | Wheat | nucleus | 15.69 | 8.16 |
| TraesCS4B01G397800.1 | Wheat | nucleus | 10.77 | 6.86 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G518500.1 | EnsemblPlantsGene:TraesCS5B01G518500 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF74 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | MapMan:25.4.1.7 | : | : |
Description
No Description!
Coordinates
chr5B:-:681616264..681618288
Molecular Weight (calculated)
35441.9 Da
IEP (calculated)
6.754
GRAVY (calculated)
-0.432
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDSNMFIQW AMETLEQEQD AAAAAGDVFP SSLLEFDNPA ELQNGTHMAA HRHGATDSWS SGDSGAAVAV ENDGWSSNCS TNYPAASLEL HLGHTAAAQH
101: YRGHPEPTRS SRPRRAGAGA QEHVVAERKR REKINRRFIE LSTVIPGLKK MDKATILSDA LRYVKEQQEK LKALQDRDVR SIDSVVLVKR PCISNSDDGF
201: PSPPPSAAGG GGLTTTMIPL PEIEARISES NVMMRIHCQD GKGVLVTLLA EVEGLHLSIT HTNVVSFPAS TLIINLMAKA RKCEHQRQIY NLNPAGRVDE
301: GFTVAADDIV WKLDSALRRH HSGKG
101: YRGHPEPTRS SRPRRAGAGA QEHVVAERKR REKINRRFIE LSTVIPGLKK MDKATILSDA LRYVKEQQEK LKALQDRDVR SIDSVVLVKR PCISNSDDGF
201: PSPPPSAAGG GGLTTTMIPL PEIEARISES NVMMRIHCQD GKGVLVTLLA EVEGLHLSIT HTNVVSFPAS TLIINLMAKA RKCEHQRQIY NLNPAGRVDE
301: GFTVAADDIV WKLDSALRRH HSGKG
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.