Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d026009_P001 | Maize | plastid | 55.95 | 92.16 |
| Zm00001d038966_P001 | Maize | plastid | 55.95 | 92.16 |
| EES10849 | Sorghum | nucleus | 77.98 | 75.94 |
| Zm00001d025462_P001 | Maize | nucleus | 71.43 | 72.73 |
| TraesCS4D01G306400.1 | Wheat | nucleus | 26.19 | 53.33 |
| Zm00001d033413_P001 | Maize | nucleus | 50.0 | 52.83 |
| Zm00001d033412_P001 | Maize | nucleus | 55.95 | 50.95 |
| HORVU3Hr1G002620.1 | Barley | plastid | 33.93 | 49.57 |
| TraesCS4A01G408700.1 | Wheat | nucleus | 38.39 | 47.78 |
| TraesCS4D01G018700.1 | Wheat | nucleus | 49.4 | 45.98 |
| TraesCS4B01G021500.1 | Wheat | nucleus | 48.81 | 45.94 |
| TraesCS4B01G020900.1 | Wheat | nucleus | 50.3 | 45.68 |
| TraesCS4D01G019200.1 | Wheat | nucleus | 48.81 | 45.56 |
| Zm00001d033407_P001 | Maize | nucleus | 48.21 | 45.51 |
| HORVU4Hr1G003210.1 | Barley | nucleus | 49.4 | 45.48 |
| TraesCS3D01G014900.1 | Wheat | nucleus | 45.24 | 45.24 |
| TraesCS4A01G292800.1 | Wheat | nucleus | 49.4 | 45.11 |
| TraesCS3A01G019000.1 | Wheat | nucleus | 42.56 | 44.83 |
| TraesCS3B01G029800.1 | Wheat | nucleus | 43.75 | 44.82 |
| TraesCS3A01G019100.1 | Wheat | nucleus | 42.26 | 44.65 |
| TraesCS4D01G306300.1 | Wheat | nucleus | 45.24 | 44.57 |
| TraesCS4B01G021200.1 | Wheat | nucleus | 48.81 | 44.44 |
| TraesCS4B01G308100.1 | Wheat | nucleus | 45.83 | 44.38 |
| TraesCS4B01G021100.1 | Wheat | nucleus | 47.92 | 44.35 |
| TraesCS4B01G308200.1 | Wheat | nucleus | 46.73 | 43.61 |
| TraesCS4B01G308300.1 | Wheat | nucleus | 46.73 | 43.13 |
| HORVU4Hr1G078880.2 | Barley | nucleus | 46.13 | 42.47 |
| HORVU4Hr1G078910.2 | Barley | nucleus | 45.83 | 41.51 |
| TraesCS4A01G408800.1 | Wheat | nucleus | 47.32 | 41.41 |
| Zm00001d024781_P001 | Maize | nucleus | 42.86 | 40.79 |
| Zm00001d031167_P002 | Maize | nucleus | 39.29 | 33.59 |
| Zm00001d028315_P001 | Maize | cytosol | 12.2 | 30.37 |
| Zm00001d033848_P004 | Maize | nucleus | 29.46 | 27.2 |
| Zm00001d013370_P001 | Maize | plastid | 28.57 | 25.74 |
| Zm00001d028312_P001 | Maize | nucleus | 22.32 | 23.44 |
| Zm00001d030232_P001 | Maize | nucleus | 19.35 | 20.31 |
| Zm00001d028314_P001 | Maize | nucleus | 10.71 | 19.25 |
| Zm00001d052728_P001 | Maize | nucleus | 13.69 | 16.73 |
| Zm00001d021164_P001 | Maize | nucleus | 14.29 | 16.55 |
| Zm00001d031717_P001 | Maize | nucleus | 12.5 | 16.54 |
| Zm00001d006150_P001 | Maize | nucleus | 14.29 | 16.49 |
| Zm00001d043706_P001 | Maize | nucleus | 15.77 | 11.35 |
| Zm00001d009013_P001 | Maize | nucleus | 17.26 | 9.49 |
| Zm00001d039271_P001 | Maize | nucleus | 17.26 | 9.42 |
| Zm00001d030028_P001 | Maize | nucleus | 18.75 | 8.94 |
| Zm00001d047017_P001 | Maize | nucleus | 18.45 | 8.82 |
| Zm00001d000236_P001 | Maize | nucleus, plastid | 14.58 | 8.8 |
| Zm00001d026147_P002 | Maize | nucleus | 16.07 | 8.77 |
| Zm00001d019170_P001 | Maize | nucleus | 13.1 | 6.53 |
| Zm00001d007536_P001 | Maize | plastid | 10.42 | 5.77 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | UniProt:A0A1D6E9Z9 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| ProteinID:ONM17219.1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF74 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI00084477B1 | EnsemblPlantsGene:Zm00001d003604 | EnsemblPlants:Zm00001d003604_P001 | EnsemblPlants:Zm00001d003604_T001 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
Transcription factor bHLH28
Coordinates
chr2:-:49654568..49655697
Molecular Weight (calculated)
35958.6 Da
IEP (calculated)
4.962
GRAVY (calculated)
-0.164
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDSGLFMQ WAMTTLQHDD EDLGVDHIDN NGRDEATFPS LRALREASQA AEMIQELIGE PHAANSRCSG GDGDTTGGGT ASSISGTAPR NSSSSSATIQ
101: PVGWNFGAAP APPGRDGVPA VSATGSLLPD LVYGSPPTRR AAVLKSVGSI YAQDHIIAER KRREKINQRF IELSTVIPGL KKMDKGTILS DATRYVKELQ
201: EKLKALEDGG SGSNDRSIES WVLVKKPCIV VPGEDAGSPS WDSSGASPAT NPLPEIEARF LNKNVMVRIH CMDGKGVVVR VLAELEELPL SIVHANVMSF
301: QACTLIITIT AKASFFSFSV IIDYTNNNII LCFLTT
101: PVGWNFGAAP APPGRDGVPA VSATGSLLPD LVYGSPPTRR AAVLKSVGSI YAQDHIIAER KRREKINQRF IELSTVIPGL KKMDKGTILS DATRYVKELQ
201: EKLKALEDGG SGSNDRSIES WVLVKKPCIV VPGEDAGSPS WDSSGASPAT NPLPEIEARF LNKNVMVRIH CMDGKGVVVR VLAELEELPL SIVHANVMSF
301: QACTLIITIT AKASFFSFSV IIDYTNNNII LCFLTT
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.