Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G308100.1 | Wheat | nucleus | 89.74 | 88.18 |
| TraesCS4D01G306400.1 | Wheat | nucleus | 40.18 | 83.03 |
| TraesCS4A01G408800.1 | Wheat | nucleus | 87.1 | 77.34 |
| HORVU4Hr1G078880.2 | Barley | nucleus | 81.52 | 76.16 |
| TraesCS3D01G014900.1 | Wheat | nucleus | 65.1 | 66.07 |
| Zm00001d038966_P001 | Maize | plastid | 30.21 | 50.49 |
| Zm00001d026009_P001 | Maize | plastid | 29.91 | 50.0 |
| TraesCS4D01G018700.1 | Wheat | nucleus | 51.03 | 48.2 |
| EES10849 | Sorghum | nucleus | 48.09 | 47.54 |
| TraesCS4D01G019200.1 | Wheat | nucleus | 50.15 | 47.5 |
| KXG37866 | Sorghum | nucleus | 49.56 | 45.55 |
| Zm00001d003604_P001 | Maize | nucleus | 44.57 | 45.24 |
| TraesCS5D01G517900.1 | Wheat | nucleus | 42.23 | 44.44 |
| Zm00001d025462_P001 | Maize | nucleus | 41.94 | 43.33 |
| TraesCS4D01G018800.2 | Wheat | nucleus | 45.75 | 43.09 |
| EER93685 | Sorghum | mitochondrion | 46.33 | 42.47 |
| Zm00001d033412_P001 | Maize | nucleus | 45.75 | 42.28 |
| Zm00001d033413_P001 | Maize | nucleus | 39.0 | 41.82 |
| TraesCS4D01G019100.1 | Wheat | nucleus | 43.7 | 40.93 |
| TraesCS5D01G020600.1 | Wheat | nucleus | 43.11 | 39.3 |
| Zm00001d024781_P001 | Maize | nucleus | 37.24 | 35.98 |
| OQU77369 | Sorghum | nucleus | 43.11 | 35.0 |
| OQU75589 | Sorghum | nucleus | 38.12 | 33.77 |
| TraesCS4D01G056900.2 | Wheat | nucleus | 29.91 | 27.2 |
| TraesCS4D01G330500.1 | Wheat | nucleus | 22.58 | 24.37 |
| TraesCS4D01G235900.1 | Wheat | nucleus | 22.87 | 24.22 |
| TraesCS7D01G102200.1 | Wheat | nucleus | 13.78 | 18.36 |
| TraesCS5D01G313600.1 | Wheat | nucleus | 14.96 | 18.28 |
| TraesCS1D01G374800.1 | Wheat | nucleus | 14.08 | 18.11 |
| TraesCS5D01G313400.1 | Wheat | nucleus | 14.08 | 17.58 |
| TraesCS5D01G313500.1 | Wheat | nucleus | 14.37 | 17.56 |
| TraesCS5D01G313700.1 | Wheat | nucleus | 13.49 | 16.73 |
| TraesCS3D01G253700.1 | Wheat | nucleus | 15.84 | 11.61 |
| TraesCS4D01G275500.1 | Wheat | nucleus | 16.42 | 9.36 |
| TraesCS3D01G166300.2 | Wheat | nucleus | 17.01 | 9.28 |
| TraesCS2D01G575600.3 | Wheat | nucleus, plastid | 15.54 | 9.0 |
| TraesCS1D01G196900.1 | Wheat | nucleus | 18.18 | 8.92 |
| TraesCS2D01G406900.1 | Wheat | nucleus | 14.66 | 8.82 |
| TraesCS4D01G224600.1 | Wheat | nucleus | 13.78 | 8.44 |
| TraesCS1D01G094200.1 | Wheat | nucleus | 14.37 | 7.77 |
| TraesCS2D01G406800.1 | Wheat | plastid | 10.56 | 7.74 |
| TraesCS1D01G094000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 2.93 | 5.0 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G306300.1 | EnsemblPlantsGene:TraesCS4D01G306300 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF74 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | MapMan:25.4.1.7 | : | : |
Description
No Description!
Coordinates
chr4D:-:474599076..474603111
Molecular Weight (calculated)
36161.5 Da
IEP (calculated)
5.409
GRAVY (calculated)
-0.360
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDMDDSRLF MQWAVSTLEQ QDPGAAGGGQ KSAGFLCLQA LRDSSELAEA QNSLSSGDDT GGCGGIISPA SDAAVHQGSW STSSPTSGGP FASSSTGSSD
101: ALSTSWNFGA VLPPQPAGSG GGGTRAPLLS GVSQLMRRAP TKGPPHAQDH VMAERKRREK INQRFIELSA LIPGLKMDKG TILTDATRYV KELQERVRSL
201: EAAGGNHRSV ETVVLVRKPC RPVAPDDGEG SARFLLAAGT PATGNQLPEI EAKLSEDNVM VRIHCEMNGK GLVSRVLTEV EELHLRIVHN DVMPFTASTV
301: IITTMAKVEE GFTVNTEEIV ERLNSALYQH SSNNSSGSNN Y
101: ALSTSWNFGA VLPPQPAGSG GGGTRAPLLS GVSQLMRRAP TKGPPHAQDH VMAERKRREK INQRFIELSA LIPGLKMDKG TILTDATRYV KELQERVRSL
201: EAAGGNHRSV ETVVLVRKPC RPVAPDDGEG SARFLLAAGT PATGNQLPEI EAKLSEDNVM VRIHCEMNGK GLVSRVLTEV EELHLRIVHN DVMPFTASTV
301: IITTMAKVEE GFTVNTEEIV ERLNSALYQH SSNNSSGSNN Y
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.