Factsheet for TraesCS4D01G018800.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G292700.1	Wheat	nucleus	89.78	90.53
TraesCS4D01G019100.1	Wheat	nucleus	87.29	86.81
TraesCS4B01G020700.1	Wheat	nucleus	82.32	81.64
TraesCS5D01G517900.1	Wheat	nucleus	57.18	63.89
HORVU4Hr1G003340.3	Barley	nucleus	77.62	60.69
Os03t0671800-01	Rice	nucleus	53.59	50.39
TraesCS4D01G306400.1	Wheat	nucleus	22.65	49.7
Zm00001d033407_P001	Maize	nucleus	47.79	48.6
TraesCS4D01G019200.1	Wheat	nucleus	47.24	47.5
EER93684	Sorghum	nucleus	50.0	47.01
TraesCS4D01G018700.1	Wheat	nucleus	46.13	46.26
TraesCS4D01G306300.1	Wheat	nucleus	43.09	45.75
TraesCS3D01G014900.1	Wheat	nucleus	41.16	44.35
TraesCS5D01G020600.1	Wheat	nucleus	40.88	39.57
TraesCS4D01G056900.2	Wheat	nucleus	32.87	31.73
TraesCS4D01G235900.1	Wheat	nucleus	23.48	26.4
TraesCS4D01G330500.1	Wheat	nucleus	22.65	25.95
TraesCS1D01G374800.1	Wheat	nucleus	13.81	18.87
TraesCS7D01G102200.1	Wheat	nucleus	13.26	18.75
TraesCS5D01G313600.1	Wheat	nucleus	14.09	18.28
TraesCS5D01G313500.1	Wheat	nucleus	13.81	17.92
TraesCS5D01G313700.1	Wheat	nucleus	13.54	17.82
TraesCS5D01G313400.1	Wheat	nucleus	13.26	17.58
TraesCS3D01G253700.1	Wheat	nucleus	15.19	11.83
TraesCS2D01G406900.1	Wheat	nucleus	15.19	9.7
TraesCS2D01G575600.3	Wheat	nucleus, plastid	15.75	9.68
TraesCS1D01G196900.1	Wheat	nucleus	18.51	9.64
TraesCS3D01G166300.2	Wheat	nucleus	16.57	9.6
TraesCS4D01G275500.1	Wheat	nucleus	15.47	9.36
TraesCS4D01G224600.1	Wheat	nucleus	14.36	9.34
TraesCS2D01G406800.1	Wheat	plastid	11.05	8.6
TraesCS1D01G094200.1	Wheat	nucleus	14.09	8.08
TraesCS1D01G094000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	4.14	7.5

Protein Annotations

EnsemblPlants:TraesCS4D01G018800.2	EnsemblPlantsGene:TraesCS4D01G018800	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR23042	PANTHER:PTHR23042:SF74	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	MapMan:25.4.1.7	:	:

Description

No Description!

Coordinates

chr4D:+:8010719..8012446

Molecular Weight (calculated)

38261.1 Da

IEP (calculated)

5.806

GRAVY (calculated)

-0.217

Length

362 amino acids

Sequence
(BLAST)

001: MYQLETMDDS SLFMQWAVDT LQHDHPPLAA AYAAGDNFPS LEELRRSALQ HGTAPAGMAV QDGHRLLSTD SWSSGDSGGR ESTSAAVVEN DVNCATTCSV
101: GSSNNYLPMS WNFTSAMAQP SNEAAPSPAT APSAGALDGP GVVEQAHVSP PSRRASAKSA ARAGHAPYAQ DHIMAERKRR EKINRRFIEL STVIPGLKKM
201: DKATILSDAV KYVKEQQEKL KALEDRNLRS VAVESVVLVK KSRTAVPQDD DVGGCCRSPS AGPGAAAGST TTTTGSVLPE IEARISESNV MVRIHCEDGK
301: GVLIRLLAEV EGLHLSITHA NAVPFQACTV IITVMAKVDE GFSVTAEDIV GRIEAALAAP TS

Best Arabidopsis Sequence Match ( AT2G22770.1 )
(BLAST)

001: MDDSSFMDLM IDTDEYLIDD WESDFPICGE TNTNPGSESG SGTGFELLAE RPTKQMKTNN NMNSTSSSPS SSSSSGSRTS QVISFGSPDT KTNPVETSLN
101: FSNQVSMDQK VGSKRKDCVN NGGRREPHLL KEHVLAERKR RQKLNERLIA LSALLPGLKK TDKATVLEDA IKHLKQLQER VKKLEEERVV TKKMDQSIIL
201: VKRSQVYLDD DSSSYSSTCS AASPLSSSSD EVSIFKQTMP MIEARVSDRD LLIRVHCEKN KGCMIKILSS LEKFRLEVVN SFTLPFGNST LVITILTKMD
301: NKFSRPVEEV VKNIRVALAE

Arabidopsis Description

NAI1NAI1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWP9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.