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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4B01G020700.1 Wheat nucleus 62.42 79.18
TraesCS4A01G292700.1 Wheat nucleus 60.48 77.99
TraesCS4D01G018800.2 Wheat nucleus 60.69 77.62
TraesCS4D01G019100.1 Wheat nucleus 59.61 75.82
HORVU0Hr1G014300.1 Barley nucleus 38.23 53.64
Zm00001d033407_P001 Maize nucleus 37.8 49.16
HORVU3Hr1G002620.1 Barley plastid 24.41 49.13
Os03t0671800-01 Rice nucleus 38.88 46.75
HORVU4Hr1G003210.1 Barley nucleus 35.42 44.93
EER93684 Sorghum nucleus 36.5 43.9
HORVU4Hr1G078910.2 Barley nucleus 33.69 42.05
HORVU4Hr1G078880.2 Barley nucleus 32.83 41.64
HORVU5Hr1G002090.11 Barley nucleus 32.61 39.53
HORVU4Hr1G009440.2 Barley nucleus 22.68 30.79
HORVU7Hr1G120420.2 Barley nucleus 23.11 27.72
HORVU0Hr1G025420.1 Barley cytosol, nucleus 7.34 20.73
HORVU5Hr1G080080.1 Barley nucleus, plastid 9.29 20.48
HORVU5Hr1G080040.1 Barley nucleus 10.8 18.66
HORVU5Hr1G079900.1 Barley cytosol 9.94 17.04
HORVU4Hr1G065640.6 Barley nucleus 9.72 13.2
HORVU3Hr1G066390.1 Barley nucleus 11.45 11.4
HORVU2Hr1G096810.5 Barley nucleus 12.31 10.16
HORVU1Hr1G050560.1 Barley nucleus 14.04 9.5
HORVU1Hr1G020370.2 Barley extracellular, nucleus 9.94 9.04
HORVU3Hr1G057280.2 Barley nucleus 12.74 7.69
Protein Annotations
EnsemblPlants:HORVU4Hr1G003340.3EnsemblPlantsGene:HORVU4Hr1G003340Gene3D:4.10.280.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638InterPro:bHLH_domncoils:Coil
PANTHER:PTHR23042PANTHER:PTHR23042:SF74PFAM:PF00010PFscan:PS50888SEG:segSMART:SM00353
SUPFAM:SSF47459UniParc:UPI000B4616B8UniProt:A0A287MYH1MapMan:15.5.32MapMan:25.4.1.7:
Description
No Description!
Coordinates
chrchr4H:-:6534657..6536629
Molecular Weight (calculated)
49924.8 Da
IEP (calculated)
6.854
GRAVY (calculated)
-0.160
Length
463 amino acids
Sequence
(BLAST)
001: VDWDRTHPNR ISADFGWRLL REVEYVSMQS IFWSLGSPSS SHQAFDPMYQ LEAMDDSSLF MQWAVDTLQH EHPPAPAAAY AGGGTFPSLE ELRRSALQHG
101: TAQDGHRHLA ADSWSSGDSA GGGHENTSAA VVENDVWSSN SAKCATACSV GSSNHLPMSW NFTSALAQPS NEAPAAAAPP SGAHDGPGVT VPEQAHVSAP
201: TSRRASAAKG AARAAGHTPY AQDHIMAERK RREKINRRFI ELSTVIPGLK KMDKATILSD AVKYVKEQQE KLKALEDRSL RSVAVESVVL VKKKSRTAAA
301: APEDDCPSPS AGAVAVSTTT TTTTGGSALP EIEARITESN VMVRIHCEDS KGVLVRLLAE VEGLHLSITH ANAIQFPACT VIITVMAKAN SFLQLHLPSI
401: SGTFSFLFLH RIFFPLSPGI LWLRPASITC IFGQNSLYFT QFYTSIFSLD STECTGIFSH CVH
Best Arabidopsis Sequence Match ( AT2G22750.2 )
(BLAST)
001: MNSLVGDVPQ SLSSLDDTTT CYNLDASCNK SLVEERPSKI LKTTHISPNL HPFSSSNPPP PKHQPSSRIL SFEKTGLHVM NHNSPNLIFS PKDEEIGLPE
101: HKKAELIIRG TKRAQSLTRS QSNAQDHILA ERKRREKLTQ RFVALSALIP GLKKMDKASV LGDAIKHIKY LQESVKEYEE QKKEKTMESV VLVKKSSLVL
201: DENHQPSSSS SSDGNRNSSS SNLPEIEVRV SGKDVLIKIL CEKQKGNVIK IMGEIEKLGL SITNSNVLPF GPTFDISIIA QKNNNFDMKI EDVVKNLSFG
301: LSKLT
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G22750]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.