Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
Predictors | GFP | MS/MS | Papers | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4B01G020700.1 | Wheat | nucleus | 62.42 | 79.18 |
TraesCS4A01G292700.1 | Wheat | nucleus | 60.48 | 77.99 |
TraesCS4D01G018800.2 | Wheat | nucleus | 60.69 | 77.62 |
TraesCS4D01G019100.1 | Wheat | nucleus | 59.61 | 75.82 |
HORVU0Hr1G014300.1 | Barley | nucleus | 38.23 | 53.64 |
Zm00001d033407_P001 | Maize | nucleus | 37.8 | 49.16 |
HORVU3Hr1G002620.1 | Barley | plastid | 24.41 | 49.13 |
Os03t0671800-01 | Rice | nucleus | 38.88 | 46.75 |
HORVU4Hr1G003210.1 | Barley | nucleus | 35.42 | 44.93 |
EER93684 | Sorghum | nucleus | 36.5 | 43.9 |
HORVU4Hr1G078910.2 | Barley | nucleus | 33.69 | 42.05 |
HORVU4Hr1G078880.2 | Barley | nucleus | 32.83 | 41.64 |
HORVU5Hr1G002090.11 | Barley | nucleus | 32.61 | 39.53 |
HORVU4Hr1G009440.2 | Barley | nucleus | 22.68 | 30.79 |
HORVU7Hr1G120420.2 | Barley | nucleus | 23.11 | 27.72 |
HORVU0Hr1G025420.1 | Barley | cytosol, nucleus | 7.34 | 20.73 |
HORVU5Hr1G080080.1 | Barley | nucleus, plastid | 9.29 | 20.48 |
HORVU5Hr1G080040.1 | Barley | nucleus | 10.8 | 18.66 |
HORVU5Hr1G079900.1 | Barley | cytosol | 9.94 | 17.04 |
HORVU4Hr1G065640.6 | Barley | nucleus | 9.72 | 13.2 |
HORVU3Hr1G066390.1 | Barley | nucleus | 11.45 | 11.4 |
HORVU2Hr1G096810.5 | Barley | nucleus | 12.31 | 10.16 |
HORVU1Hr1G050560.1 | Barley | nucleus | 14.04 | 9.5 |
HORVU1Hr1G020370.2 | Barley | extracellular, nucleus | 9.94 | 9.04 |
HORVU3Hr1G057280.2 | Barley | nucleus | 12.74 | 7.69 |
Protein Annotations
EnsemblPlants:HORVU4Hr1G003340.3 | EnsemblPlantsGene:HORVU4Hr1G003340 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
PANTHER:PTHR23042 | PANTHER:PTHR23042:SF74 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
SUPFAM:SSF47459 | UniParc:UPI000B4616B8 | UniProt:A0A287MYH1 | MapMan:15.5.32 | MapMan:25.4.1.7 | : |
Description
No Description!
Coordinates
chrchr4H:-:6534657..6536629
Molecular Weight (calculated)
49924.8 Da
IEP (calculated)
6.854
GRAVY (calculated)
-0.160
Length
463 amino acids
Sequence
(BLAST)
(BLAST)
001: VDWDRTHPNR ISADFGWRLL REVEYVSMQS IFWSLGSPSS SHQAFDPMYQ LEAMDDSSLF MQWAVDTLQH EHPPAPAAAY AGGGTFPSLE ELRRSALQHG
101: TAQDGHRHLA ADSWSSGDSA GGGHENTSAA VVENDVWSSN SAKCATACSV GSSNHLPMSW NFTSALAQPS NEAPAAAAPP SGAHDGPGVT VPEQAHVSAP
201: TSRRASAAKG AARAAGHTPY AQDHIMAERK RREKINRRFI ELSTVIPGLK KMDKATILSD AVKYVKEQQE KLKALEDRSL RSVAVESVVL VKKKSRTAAA
301: APEDDCPSPS AGAVAVSTTT TTTTGGSALP EIEARITESN VMVRIHCEDS KGVLVRLLAE VEGLHLSITH ANAIQFPACT VIITVMAKAN SFLQLHLPSI
401: SGTFSFLFLH RIFFPLSPGI LWLRPASITC IFGQNSLYFT QFYTSIFSLD STECTGIFSH CVH
101: TAQDGHRHLA ADSWSSGDSA GGGHENTSAA VVENDVWSSN SAKCATACSV GSSNHLPMSW NFTSALAQPS NEAPAAAAPP SGAHDGPGVT VPEQAHVSAP
201: TSRRASAAKG AARAAGHTPY AQDHIMAERK RREKINRRFI ELSTVIPGLK KMDKATILSD AVKYVKEQQE KLKALEDRSL RSVAVESVVL VKKKSRTAAA
301: APEDDCPSPS AGAVAVSTTT TTTTGGSALP EIEARITESN VMVRIHCEDS KGVLVRLLAE VEGLHLSITH ANAIQFPACT VIITVMAKAN SFLQLHLPSI
401: SGTFSFLFLH RIFFPLSPGI LWLRPASITC IFGQNSLYFT QFYTSIFSLD STECTGIFSH CVH
001: MNSLVGDVPQ SLSSLDDTTT CYNLDASCNK SLVEERPSKI LKTTHISPNL HPFSSSNPPP PKHQPSSRIL SFEKTGLHVM NHNSPNLIFS PKDEEIGLPE
101: HKKAELIIRG TKRAQSLTRS QSNAQDHILA ERKRREKLTQ RFVALSALIP GLKKMDKASV LGDAIKHIKY LQESVKEYEE QKKEKTMESV VLVKKSSLVL
201: DENHQPSSSS SSDGNRNSSS SNLPEIEVRV SGKDVLIKIL CEKQKGNVIK IMGEIEKLGL SITNSNVLPF GPTFDISIIA QKNNNFDMKI EDVVKNLSFG
301: LSKLT
101: HKKAELIIRG TKRAQSLTRS QSNAQDHILA ERKRREKLTQ RFVALSALIP GLKKMDKASV LGDAIKHIKY LQESVKEYEE QKKEKTMESV VLVKKSSLVL
201: DENHQPSSSS SSDGNRNSSS SNLPEIEVRV SGKDVLIKIL CEKQKGNVIK IMGEIEKLGL SITNSNVLPF GPTFDISIIA QKNNNFDMKI EDVVKNLSFG
301: LSKLT
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G22750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.