Factsheet for TraesCS4A01G292700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G018800.2	Wheat	nucleus	90.53	89.78
TraesCS4D01G019100.1	Wheat	nucleus	86.07	84.89
TraesCS4B01G020700.1	Wheat	nucleus	81.62	80.27
TraesCS4A01G354100.1	Wheat	nucleus	56.82	62.77
HORVU4Hr1G003340.3	Barley	nucleus	77.99	60.48
Os03t0671800-01	Rice	nucleus	54.32	50.65
Zm00001d033407_P001	Maize	nucleus	48.47	48.88
EER93684	Sorghum	nucleus	49.58	46.23
TraesCS4A01G292800.1	Wheat	nucleus	47.35	46.2
TraesCS3A01G019000.1	Wheat	nucleus	39.0	43.89
TraesCS4A01G408700.1	Wheat	nucleus	32.31	42.96
TraesCS4A01G408800.1	Wheat	nucleus	44.29	41.41
TraesCS3A01G019100.1	Wheat	nucleus	36.49	41.2
TraesCS7A01G558700.1	Wheat	nucleus	34.26	38.32
TraesCS5A01G014800.1	Wheat	nucleus	41.78	38.17
TraesCS4A01G257900.2	Wheat	nucleus	32.03	30.5
TraesCS5A01G555200.1	Wheat	nucleus	24.79	28.62
TraesCS5A01G505100.1	Wheat	nucleus	23.68	28.43
TraesCS4A01G059100.1	Wheat	nucleus	24.51	26.51
TraesCS5A01G555300.1	Wheat	nucleus	14.76	21.63
TraesCS5A01G306400.1	Wheat	nucleus	11.7	18.83
TraesCS1A01G369200.1	Wheat	nucleus	10.31	18.69
TraesCS5A01G306600.1	Wheat	nucleus	14.21	18.55
TraesCS5A01G306200.1	Wheat	nucleus	14.21	18.28
TraesCS5A01G306700.1	Wheat	peroxisome	13.93	18.25
TraesCS2A01G448500.1	Wheat	nucleus	12.81	17.97
TraesCS5A01G306500.1	Wheat	nucleus	13.65	17.44
TraesCS3A01G252900.1	Wheat	nucleus	14.48	11.33
TraesCS2A01G409600.2	Wheat	nucleus, plastid	15.32	9.86
TraesCS5A01G489500.1	Wheat	nucleus	15.6	9.82
TraesCS2A01G409400.1	Wheat	nucleus	15.32	9.68
TraesCS1A01G102400.2	Wheat	nucleus, vacuole	16.71	9.58
TraesCS5A01G558500.1	Wheat	nucleus	15.6	9.57
TraesCS1A01G193200.1	Wheat	nucleus	18.38	9.52
TraesCS3A01G158600.1	Wheat	nucleus	16.16	9.42
TraesCS4A01G028900.1	Wheat	nucleus	15.32	9.21

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.7	Gene3D:4.10.280.10	InterPro:ACT_dom	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR002912	InterPro:IPR011598
InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PFscan:PS51671	PANTHER:PTHR23042	PANTHER:PTHR23042:SF74
SMART:SM00353	SUPFAM:SSF47459	EnsemblPlantsGene:TraesCS4A01G292700	EnsemblPlants:TraesCS4A01G292700.1	InterPro:bHLH_dom	TIGR:cd00083
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:595282332..595284053

Molecular Weight (calculated)

38115.7 Da

IEP (calculated)

5.893

GRAVY (calculated)

-0.244

Length

359 amino acids

Sequence
(BLAST)

001: MYHLETMDDS SLFMQWAVDT LQHEHPPLAA AYAAGDNFPS LEELRRSALQ HGTAPAGMAV QDGHRHLATD SWSSGDSGHE NTSAAVVEND ANCATTCSVG
101: SSNNYLPMSW NFTSAVAQPS NEAAPSPATA PSARALDGPG VVEQAHVSPP SRRASAKSAA RAGHAPYAQD HIMAERKRRE KINRRFIELS TVIPGLKKMD
201: KATILSDAVR YVKEQQEKLR ALEDRNRRSA AVDLVVLVKK SRAAVPEDDD VGGWCPSPSA GAVAGSTTAT TTGSALPEIE ARISESDVMV RIHCEDAKGV
301: LVRLLAEVEG LHLSITHANA IPFPACTLII TVTAKVDDGF SVTAEDIVGK LEAALPAAT

Best Arabidopsis Sequence Match ( AT2G22770.1 )
(BLAST)

001: MDDSSFMDLM IDTDEYLIDD WESDFPICGE TNTNPGSESG SGTGFELLAE RPTKQMKTNN NMNSTSSSPS SSSSSGSRTS QVISFGSPDT KTNPVETSLN
101: FSNQVSMDQK VGSKRKDCVN NGGRREPHLL KEHVLAERKR RQKLNERLIA LSALLPGLKK TDKATVLEDA IKHLKQLQER VKKLEEERVV TKKMDQSIIL
201: VKRSQVYLDD DSSSYSSTCS AASPLSSSSD EVSIFKQTMP MIEARVSDRD LLIRVHCEKN KGCMIKILSS LEKFRLEVVN SFTLPFGNST LVITILTKMD
301: NKFSRPVEEV VKNIRVALAE

Arabidopsis Description

NAI1NAI1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWP9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.