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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS2A01G169300.1
TraesCS2B01G195600.1
TraesCS2D01G176800.1
TraesCS5A01G212800.1
TraesCS5B01G211000.1
TraesCS5D01G219300.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G01260.1 TraesCS2A01G169300.1 AT1G19180.1 21798944
AT1G01260.1 TraesCS2B01G195600.1 AT1G19180.1 21798944
AT1G01260.1 TraesCS2D01G176800.1 AT1G19180.1 21798944
AT1G01260.1 TraesCS5A01G212800.1 AT1G19180.1 21798944
AT1G01260.1 TraesCS5B01G211000.1 AT1G19180.1 21798944
AT1G01260.1 TraesCS5D01G219300.2 AT1G19180.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3B01G185400.1 Wheat nucleus 99.35 97.92
TraesCS3D01G166300.2 Wheat nucleus 98.86 97.44
HORVU3Hr1G057280.2 Barley nucleus 97.4 78.23
TraesCS4A01G028900.1 Wheat nucleus 64.94 67.0
EES19274 Sorghum nucleus 58.93 61.84
GSMUA_Achr10P... Banana nucleus 44.48 59.7
GSMUA_Achr7P14640_001 Banana nucleus 44.32 56.41
GSMUA_Achr8P05350_001 Banana nucleus 36.2 49.45
GSMUA_Achr1P28110_001 Banana nucleus 39.77 49.3
GSMUA_AchrUn_... Banana cytosol, nucleus, plastid 36.2 46.95
GSMUA_Achr8P26280_001 Banana cytosol 35.23 46.87
VIT_15s0046g00320.t01 Wine grape nucleus 44.97 45.86
KRH68922 Soybean nucleus 40.91 45.82
CDY27319 Canola nucleus 32.63 45.37
Solyc01g096050.2.1 Tomato nucleus 44.32 45.12
PGSC0003DMT400000652 Potato nucleus 43.67 44.98
GSMUA_Achr6P35730_001 Banana nucleus 34.9 43.79
CDY66312 Canola nucleus 32.47 43.67
PGSC0003DMT400018046 Potato extracellular, nucleus 40.91 43.6
KRH06456 Soybean nucleus 43.67 43.53
TraesCS3A01G252900.1 Wheat nucleus 32.31 43.36
Bra039279.1-P Field mustard nucleus 32.31 43.36
KRH47899 Soybean nucleus 43.99 43.29
Solyc05g050560.1.1 Tomato nucleus 39.94 42.49
GSMUA_Achr1P14370_001 Banana cytosol, nucleus, plastid 39.61 42.43
KRG97199 Soybean nucleus 41.4 41.2
Bra004532.1-P Field mustard nucleus 32.47 41.15
CDY56874 Canola nucleus 32.79 41.14
CDX80023 Canola nucleus 32.47 41.07
CDX90021 Canola nucleus 35.55 40.56
AT1G01260.1 Thale cress nucleus 38.64 40.34
Bra033273.1-P Field mustard nucleus 37.01 39.04
AT2G46510.1 Thale cress nucleus 35.06 38.16
TraesCS1A01G369200.1 Wheat nucleus 9.09 28.28
TraesCS5A01G306400.1 Wheat nucleus 10.23 28.25
TraesCS5A01G306600.1 Wheat nucleus 12.5 28.0
TraesCS5A01G306700.1 Wheat peroxisome 12.34 27.74
TraesCS5A01G306500.1 Wheat nucleus 12.5 27.4
TraesCS5A01G306200.1 Wheat nucleus 12.34 27.24
TraesCS1A01G193200.1 Wheat nucleus 28.41 25.25
TraesCS2A01G448500.1 Wheat nucleus 10.39 25.0
TraesCS2A01G409600.2 Wheat nucleus, plastid 18.34 20.25
TraesCS2A01G409400.1 Wheat nucleus 18.18 19.72
TraesCS5A01G558500.1 Wheat nucleus 18.34 19.32
TraesCS5A01G489500.1 Wheat nucleus 17.86 19.3
TraesCS3A01G019000.1 Wheat nucleus 9.09 17.55
TraesCS5A01G555300.1 Wheat nucleus 6.82 17.14
TraesCS5A01G555200.1 Wheat nucleus 8.6 17.04
TraesCS3A01G019100.1 Wheat nucleus 8.77 16.98
TraesCS4A01G354100.1 Wheat nucleus 8.93 16.92
TraesCS5A01G505100.1 Wheat nucleus 8.12 16.72
TraesCS1A01G102400.2 Wheat nucleus, vacuole 16.56 16.29
TraesCS4A01G292700.1 Wheat nucleus 9.42 16.16
TraesCS4A01G257900.2 Wheat nucleus 9.74 15.92
TraesCS4A01G292800.1 Wheat nucleus 9.42 15.76
TraesCS4A01G408800.1 Wheat nucleus 9.58 15.36
TraesCS4A01G408700.1 Wheat nucleus 6.66 15.19
TraesCS4A01G059100.1 Wheat nucleus 7.95 14.76
TraesCS7A01G558700.1 Wheat nucleus 7.47 14.33
TraesCS5A01G014800.1 Wheat nucleus 9.09 14.25
Protein Annotations
EnsemblPlants:TraesCS3A01G158600.1EnsemblPlantsGene:TraesCS3A01G158600Gene3D:4.10.280.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638InterPro:MYC/MYB_NInterPro:bHLH_dom
ncoils:CoilPANTHER:PTHR11514PANTHER:PTHR11514:SF47PFAM:PF00010PFAM:PF14215PFscan:PS50888
SEG:segSMART:SM00353SUPFAM:SSF47459TIGR:cd00083MapMan:15.5.32:
Description
No Description!
Coordinates
chr3A:-:156267999..156270204
Molecular Weight (calculated)
67349.7 Da
IEP (calculated)
6.961
GRAVY (calculated)
-0.500
Length
616 amino acids
Sequence
(BLAST)
001: MKMEVEEDGA NGGNGGAWTE EDRDLSTTVL GRDAFAYLTK GGGTISEGLV AASSPVDLQN KLQELIESEH PGAGWNYAIF WQLSRTKSGD LVLGWGDGSC
101: REPNDAELAA AASAGNDDAK QRMWKRVLQR LHKAFGGADE EDYAPTIGQV TDTEMFFLAS MYFAFPRRAG APGQVFAAGL PLWVPNSERN VFPANYCYRG
201: YLASTAGFRT ILLVPFETGV LELGSMQQVA ESSDTLQTIK SVFAGTGGNK DIIPSREGNG HIERSPGLAK IFGKDLNLGR SSAGPVIGVS KVDERPWEQR
301: TAGGGSSLLP NVQKGLQSFT WSQARGLNSH QQKFGNGILI VSNEATHGNN RTADSSTTTQ FQLQKAPQLQ KLPLLQKPPQ LVKPLQMVNQ QQLQPQAPRQ
401: IDFSAGTSSK SGVLVTRAAV LDGDSSEVNG LCKEEGTTPV IEDRRPRKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNISK MDKASLLGDA
501: IAYITDLQKK LKDMETERER FLESGMVDPR ERAPRPEVDI QVVQDEVLVR VMSPLENHPV KKVFEAFEEA DVRVGESKLT GNNGTVVHSF IIKCPGSEQQ
601: TREKVIAAMS RAMSSV
Best Arabidopsis Sequence Match ( AT1G01260.1 )
(BLAST)
001: MNIGRLVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TLGSDENLQN KLSDLVERPN ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR
Arabidopsis Description
BHLH13Transcription factor bHLH13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.