Factsheet for Bra033273.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra025713.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01260.1	Bra025713.1-P	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90021	Canola	nucleus	91.95	99.44
AT1G01260.1	Thale cress	nucleus	78.25	77.46
VIT_15s0046g00320.t01	Wine grape	nucleus	55.31	53.48
Solyc01g096050.2.1	Tomato	nucleus	52.91	51.07
PGSC0003DMT400000652	Potato	nucleus	51.88	50.67
KRH68922	Soybean	nucleus	47.6	50.55
PGSC0003DMT400018046	Potato	extracellular, nucleus	49.83	50.35
Solyc05g050560.1.1	Tomato	nucleus	48.97	49.4
Bra039279.1-P	Field mustard	nucleus	38.01	48.37
Bra004532.1-P	Field mustard	nucleus	40.07	48.15
KRH06456	Soybean	nucleus	50.86	48.06
GSMUA_Achr10P...	Banana	nucleus	37.33	47.49
KRH47899	Soybean	nucleus	50.68	47.28
KRG97199	Soybean	nucleus	49.66	46.85
GSMUA_Achr8P05350_001	Banana	nucleus	34.93	45.23
GSMUA_Achr1P28110_001	Banana	nucleus	37.67	44.27
GSMUA_Achr8P26280_001	Banana	cytosol	34.25	43.2
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	34.25	42.11
GSMUA_Achr6P35730_001	Banana	nucleus	33.22	39.51
GSMUA_Achr1P14370_001	Banana	cytosol, nucleus, plastid	38.7	39.3
GSMUA_Achr7P14640_001	Banana	nucleus	32.53	39.26
TraesCS4B01G276900.1	Wheat	nucleus	40.07	39.13
TraesCS4A01G028900.1	Wheat	nucleus	39.9	39.03
Bra038458.1-P	Field mustard	nucleus	30.14	39.02
TraesCS4D01G275500.1	Wheat	nucleus	39.9	38.96
Bra017527.1-P	Field mustard	nucleus	14.9	38.5
Bra012720.1-P	Field mustard	nucleus	29.79	38.16
EER99993	Sorghum	nucleus	40.07	37.62
Os01t0235700-01	Rice	nucleus	39.55	37.44
Zm00001d009013_P001	Maize	nucleus	38.87	37.15
TraesCS3A01G158600.1	Wheat	nucleus	39.04	37.01
Zm00001d039271_P001	Maize	nucleus	38.87	36.85
TraesCS3B01G185400.1	Wheat	nucleus	39.21	36.64
EES19274	Sorghum	nucleus	36.82	36.63
TraesCS3D01G166300.2	Wheat	nucleus	39.04	36.48
Bra013263.1-P	Field mustard	nucleus	14.55	31.37
HORVU3Hr1G057280.2	Barley	nucleus	39.73	30.25
Bra024993.1-P	Field mustard	nucleus	19.01	29.44
Bra024992.1-P	Field mustard	nucleus	13.53	29.15
Bra024998.1-P	Field mustard	nucleus	27.74	27.93
Bra017520.1-P	Field mustard	nucleus	23.63	27.71
Zm00001d007536_P001	Maize	plastid	28.6	27.51
Bra017523.1-P	Field mustard	nucleus	23.8	27.42
Bra010178.1-P	Field mustard	nucleus	27.57	26.83
Bra013264.1-P	Field mustard	nucleus	12.84	25.25
Bra039924.1-P	Field mustard	nucleus	10.96	20.45
Bra013128.1-P	Field mustard	nucleus	9.25	20.22
Bra030210.1-P	Field mustard	nucleus	10.79	19.57
Bra010617.1-P	Field mustard	nucleus	10.96	19.16
Bra011790.1-P	Field mustard	nucleus	10.62	18.45
Bra027653.1-P	Field mustard	nucleus	18.66	18.29
Bra027796.1-P	Field mustard	nucleus	18.66	17.99
Bra037887.1-P	Field mustard	nucleus	14.9	17.5
Bra025508.1-P	Field mustard	nucleus	17.98	16.69
Bra030208.1-P	Field mustard	nucleus	7.53	14.47
Bra039926.1-P	Field mustard	nucleus	7.02	14.14
Bra039927.1-P	Field mustard	nucleus	7.36	13.61
Bra030207.1-P	Field mustard	nucleus	7.36	13.19
Bra000970.1-P	Field mustard	nucleus	14.04	12.54
Bra037343.1-P	Field mustard	cytosol	13.53	11.11

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra033273	EnsemblPlants:Bra033273.1	EnsemblPlants:Bra033273.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0010629	GO:GO:0044212	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
UniProt:M4EWT8	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514
PANTHER:PTHR11514:SF47	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000254514F	InterPro:bHLH_dom	SEG:seg

Description

AT1G01260 (E=3e-236) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA10:+:4557373..4559127

Molecular Weight (calculated)

64185.4 Da

IEP (calculated)

6.457

GRAVY (calculated)

-0.529

Length

584 amino acids

Sequence
(BLAST)

001: MSNNNNNNNS SSVWNEDDKA IVASLLGKKA LDYLLSNSVP NANLLMTVGS DDNLQNKLSD LVETPNSSNF SWNYAIFWQV SRSKSGDLVL CWGDGSCREP
101: KDGERSEMMR MLSMGREEET HQTLRKRVLQ KLHALFGGLD DEEDSCALVL DRVTDTEMFL LASMYFSFPR GQGGPGKCFH SSQPVWLSDL VNSGSDYCVR
201: SFLAKSAGIQ TVVLVPTDIG VVELGSTSCL PHSDESLSSI RLSFSSPPPP PPPPPVRLPV VVANHNDDNS SSKIFGKDLH SSSGFLHQQQ HRQFREKLTV
301: RKMDDNRVPK RLDGNNNRFM FSNPITTMTT STWIPPEAPS REDFKFLPLQ QTSSSSHRLL PPAQMQIDFS GASSRPSDNN SDGGGGGGGG GGDWSDLVGG
401: VDESGGDNRP RKRGRRPANG RAEALNHVEA ERQRREKLNQ RFYALRSVVP NISKMDKASL LGDAVSYINE LYAKLKVMEA EREKLGYSSN PLICLEPPAV
501: NVQTAGEDVA VTVNCSLDSH PASRIFHAFE EAKVEVINAK LEVPQDVVLH TFVIKSEEVT KEKLISALSR EQSGSVQSRT SSGR

Best Arabidopsis Sequence Match ( AT1G01260.3 )
(BLAST)

001: MNIGRLVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TLGSDENLQN KLSDLVERPN ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR

Arabidopsis Description

BHLH13Transcription factor bHLH13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.