Factsheet for Bra017520.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59973	Canola	nucleus	97.99	95.87
CDY03183	Canola	nucleus	93.17	91.16
Bra017523.1-P	Field mustard	nucleus	80.32	78.9
Bra024992.1-P	Field mustard	nucleus	30.12	55.35
Bra024993.1-P	Field mustard	nucleus	40.16	53.05
Bra017527.1-P	Field mustard	nucleus	23.09	50.88
Bra010178.1-P	Field mustard	nucleus	53.41	44.33
Bra013263.1-P	Field mustard	nucleus	23.29	42.8
Solyc08g005050.2.1	Tomato	nucleus	35.34	37.93
Bra024998.1-P	Field mustard	nucleus	43.98	37.76
PGSC0003DMT400002963	Potato	nucleus	44.98	37.46
KRH75613	Soybean	nucleus	47.79	37.36
VIT_02s0012g01320.t01	Wine grape	nucleus	49.6	37.25
KRH74418	Soybean	nucleus	46.99	36.45
KRH45440	Soybean	nucleus	47.39	36.09
Solyc08g076930.1.1	Tomato	nucleus	47.59	34.4
TraesCS1A01G369200.1	Wheat	nucleus	13.65	34.34
PGSC0003DMT400045204	Potato	nucleus	47.59	34.15
TraesCSU01G222600.1	Wheat	nucleus	16.47	33.33
TraesCS2B01G469200.1	Wheat	nucleus	16.47	33.33
Bra013264.1-P	Field mustard	nucleus	19.88	33.33
TraesCS2A01G448500.1	Wheat	nucleus	17.07	33.2
HORVU0Hr1G025420.1	Barley	cytosol, nucleus	10.84	32.93
TraesCS2B01G469300.1	Wheat	nucleus	16.87	32.81
TraesCS7D01G102200.1	Wheat	nucleus	16.67	32.42
KRH39540	Soybean	nucleus	47.39	32.28
TraesCS1D01G374800.1	Wheat	nucleus	17.07	32.08
Zm00001d031717_P001	Maize	nucleus	16.27	31.89
Os10t0575000-01	Rice	nucleus	44.38	31.62
HORVU1Hr1G050560.1	Barley	nucleus	43.37	31.58
Zm00001d047017_P001	Maize	nucleus	44.58	31.58
TraesCS1B01G208000.1	Wheat	nucleus	43.37	31.17
Zm00001d030028_P001	Maize	nucleus	43.98	31.06
KXG39194	Sorghum	nucleus	43.98	30.98
TraesCS1D01G196900.1	Wheat	nucleus	43.17	30.94
HORVU5Hr1G080080.1	Barley	nucleus, plastid	12.85	30.48
Os09t0519100-00	Rice	nucleus	16.06	30.3
TraesCS1B01G387900.1	Wheat	nucleus	14.46	30.13
OQU75588	Sorghum	nucleus	15.86	30.04
OQU80776	Sorghum	nucleus	15.86	30.04
TraesCS1A01G193200.1	Wheat	nucleus	41.77	30.01
KXG25462	Sorghum	nucleus	16.47	29.5
EER97058	Sorghum	cytosol, nucleus, plastid	16.27	29.35
TraesCS5A01G306700.1	Wheat	peroxisome	16.06	29.2
HORVU5Hr1G080040.1	Barley	nucleus	15.66	29.1
Zm00001d052728_P001	Maize	nucleus	16.06	29.09
TraesCS5A01G306600.1	Wheat	nucleus	16.06	29.09
TraesCS5D01G313700.1	Wheat	nucleus	16.06	29.09
TraesCS5D01G313400.1	Wheat	nucleus	15.86	28.94
TraesCS5B01G307100.1	Wheat	nucleus	15.86	28.94
TraesCS5B01G306600.1	Wheat	nucleus	15.86	28.94
OQU86344	Sorghum	nucleus	14.86	28.91
TraesCS5A01G306400.1	Wheat	nucleus	12.85	28.7
TraesCS5A01G306200.1	Wheat	nucleus	16.06	28.67
OQU80778	Sorghum	nucleus	15.46	28.52
TraesCS5A01G306500.1	Wheat	nucleus	16.06	28.47
TraesCS5D01G313600.1	Wheat	nucleus	15.86	28.32
TraesCS5D01G313500.1	Wheat	nucleus	15.86	28.32
TraesCS5B01G307000.1	Wheat	nucleus	15.86	28.32
OQU80777	Sorghum	nucleus	15.86	28.21
Os08t0543700-00	Rice	nucleus, peroxisome, plastid	14.86	28.14
OQU80775	Sorghum	cytosol, nucleus, peroxisome, plastid	15.66	27.96
Bra039279.1-P	Field mustard	nucleus	25.7	27.89
Zm00001d021164_P001	Maize	nucleus	16.06	27.59
Zm00001d006150_P001	Maize	nucleus	16.06	27.49
EER99201	Sorghum	nucleus	16.27	27.36
TraesCS5B01G306800.1	Wheat	nucleus	15.26	27.14
Bra004532.1-P	Field mustard	nucleus	26.1	26.75
HORVU5Hr1G079900.1	Barley	cytosol	14.46	26.67
Bra012720.1-P	Field mustard	nucleus	23.69	25.88
Bra038458.1-P	Field mustard	nucleus	23.29	25.72
Bra033273.1-P	Field mustard	nucleus	27.71	23.63
Bra037887.1-P	Field mustard	nucleus	19.88	19.92
Bra013128.1-P	Field mustard	nucleus	9.64	17.98
Bra011790.1-P	Field mustard	nucleus	12.05	17.86
Bra010617.1-P	Field mustard	nucleus	11.85	17.66
Bra039924.1-P	Field mustard	nucleus	11.04	17.57
Bra030210.1-P	Field mustard	nucleus	11.24	17.39
Bra027653.1-P	Field mustard	nucleus	20.68	17.28
Bra027796.1-P	Field mustard	nucleus	20.28	16.67
Bra025508.1-P	Field mustard	nucleus	20.28	16.06
Bra030208.1-P	Field mustard	nucleus	8.63	14.14
Bra039926.1-P	Field mustard	nucleus	8.23	14.14
Bra000970.1-P	Field mustard	nucleus	18.47	14.07
Bra039927.1-P	Field mustard	nucleus	8.43	13.29
Bra030207.1-P	Field mustard	nucleus	8.23	12.58
Bra037343.1-P	Field mustard	cytosol	16.47	11.53

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra017520	EnsemblPlants:Bra017520.1	EnsemblPlants:Bra017520.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M4DLY9	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
PANTHER:PTHR11514	PANTHER:PTHR11514:SF43	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002542447	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

AT5G46830 (E=3e-143) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA09:-:16028967..16030463

Molecular Weight (calculated)

55212.0 Da

IEP (calculated)

5.999

GRAVY (calculated)

-0.520

Length

498 amino acids

Sequence
(BLAST)

001: MIEALMNSPS SDSWPPLSPA NPSPDSALQK RLQAVLNGTH EAWTYVIFWT PSYYDFSGDS VLKWGDGIYK GEEADKTRRR RRTVAENEHR STILRELSSM
101: ISDEALLVMG DEDDLEVSDP SWFYLTSMTV SFGSGSGLPG KAFATYKPVW VTGSDHIMGS GCDRAKKGGD LGLQTIVCIP LDNGVLELGS TAEIQQTPDL
201: FNKIRVVFSF EGSRDFSGDP NSNSFPRFST QLDNGGGSST VTFSPYPGPF YPQILNTLSQ EINFNTLEGD HSGEIHSTNR NAYPGQIQND DGHIDDFVHS
301: DIEATVAPDN KRKKKRGRKL ANGRKEPLNH VQAERLRREK LNMQFYALRA TVPNVSKMDK ASLLGDAICY INELKSRAEN AESKKNAIQM ELNKLREEIA
401: GRNAVSSVCR GEGNASENET ANIDVKILGC DAMVRLESSK RNHPAARLMN AFMDLDVELN HASISVIHDL MIQQATVKMG SRMYTQDQLR AMLVSKIN

Best Arabidopsis Sequence Match ( AT5G46830.1 )
(BLAST)

001: MINTDDNLLM IEALLTSDPS PPLLPANLSL ETTLPKRLHA VLNGTHEPWS YAIFWKPSYD DFSGEAVLKW GDGVYTGGNE EKTRGRLRRK KTILSSPEEK
101: ERRSNVIREL NLMISGEAFP VVEDDVSDDD DVEVTDMEWF FLVSMTWSFG NGSGLAGKAF ASYNPVLVTG SDLIYGSGCD RAKQGGDVGL QTILCIPSHN
201: GVLELASTEE IRPNSDLFNR IRFLFGGSKY FSGAPNSNSE LFPFQLESSC SSTVTGNPNP SPVYLQNRYN LNFSTSSSTL ARAPCGDVLS FGENVKQSFE
301: NRNPNTYSDQ IQNVVPHATV MLEKKKGKKR GRKPAHGRDK PLNHVEAERM RREKLNHRFY ALRAVVPNVS KMDKTSLLED AVCYINELKS KAENVELEKH
401: AIEIQFNELK EIAGQRNAIP SVCKYEEKAS EMMKIEVKIM ESDDAMVRVE SRKDHHPGAR LMNALMDLEL EVNHASISVM NDLMIQQANV KMGLRIYKQE
501: ELRDLLMSKI S

Arabidopsis Description

BHLH28Transcription factor bHLH28 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.