Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra023252.1-P | |
| Bra035511.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G22760.1 | Bra023252.1-P | AT1G32230.1 | 19548978 |
| AT2G22760.1 | Bra035511.1-P | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25629 | Canola | nucleus | 97.37 | 98.67 |
| Bra039926.1-P | Field mustard | nucleus | 74.34 | 77.93 |
| AT2G22760.1 | Thale cress | nucleus | 73.03 | 75.25 |
| VIT_07s0205g00170.t01 | Wine grape | cytosol | 18.09 | 43.65 |
| Bra039927.1-P | Field mustard | nucleus | 39.8 | 38.29 |
| Bra030207.1-P | Field mustard | nucleus | 39.8 | 37.12 |
| Bra039924.1-P | Field mustard | nucleus | 31.58 | 30.67 |
| KRH28295 | Soybean | nucleus | 29.93 | 29.07 |
| Bra010617.1-P | Field mustard | nucleus | 31.91 | 29.04 |
| Bra030210.1-P | Field mustard | nucleus | 30.59 | 28.88 |
| Bra011790.1-P | Field mustard | nucleus | 31.58 | 28.57 |
| Bra013128.1-P | Field mustard | nucleus | 24.67 | 28.09 |
| KRH77195 | Soybean | nucleus | 33.88 | 27.99 |
| KRH77192 | Soybean | nucleus | 30.59 | 27.27 |
| KRH28296 | Soybean | nucleus | 31.25 | 27.22 |
| KRH04348 | Soybean | nucleus | 33.22 | 27.08 |
| KRH58186 | Soybean | nucleus | 31.58 | 26.59 |
| KRH58189 | Soybean | nucleus | 29.93 | 23.82 |
| KRH04346 | Soybean | nucleus | 28.95 | 23.72 |
| Bra017527.1-P | Field mustard | nucleus | 14.47 | 19.47 |
| Bra013263.1-P | Field mustard | nucleus | 14.47 | 16.24 |
| Bra024992.1-P | Field mustard | nucleus | 14.14 | 15.87 |
| Bra038458.1-P | Field mustard | nucleus | 14.8 | 9.98 |
| Bra037887.1-P | Field mustard | nucleus | 16.12 | 9.86 |
| Bra039279.1-P | Field mustard | nucleus | 14.8 | 9.8 |
| Bra004532.1-P | Field mustard | nucleus | 15.13 | 9.47 |
| Bra012720.1-P | Field mustard | nucleus | 13.82 | 9.21 |
| Bra024998.1-P | Field mustard | nucleus | 17.43 | 9.14 |
| Bra017523.1-P | Field mustard | nucleus | 15.13 | 9.07 |
| Bra025508.1-P | Field mustard | nucleus | 18.42 | 8.9 |
| Bra010178.1-P | Field mustard | nucleus | 17.43 | 8.83 |
| Bra017520.1-P | Field mustard | nucleus | 14.14 | 8.63 |
| Bra027653.1-P | Field mustard | nucleus | 16.45 | 8.39 |
| Bra027796.1-P | Field mustard | nucleus | 16.45 | 8.25 |
| Bra024993.1-P | Field mustard | nucleus | 9.54 | 7.69 |
| Bra033273.1-P | Field mustard | nucleus | 14.47 | 7.53 |
| Bra000970.1-P | Field mustard | nucleus | 12.17 | 5.66 |
| Bra037343.1-P | Field mustard | cytosol | 10.86 | 4.64 |
| Bra013264.1-P | Field mustard | nucleus | 2.63 | 2.69 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | EnsemblPlantsGene:Bra030208 | EnsemblPlants:Bra030208.1 | EnsemblPlants:Bra030208.1-P |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M4EN38 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11514 |
| PANTHER:PTHR11514:SF48 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00025443EB | InterPro:bHLH_dom | SEG:seg |
Description
AT2G22760 (E=2e-073) | basic helix-loop-helix (bHLH) family protein
Coordinates
chrA04:+:9982115..9983443
Molecular Weight (calculated)
34441.4 Da
IEP (calculated)
6.876
GRAVY (calculated)
-0.363
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MDADFFSTDF SLENIDFDFN IHEEMNVTPV EASMHTQRAH YSSSFDHQMN LDFLKEKPKP AVKEMMNINN KSRVISFDFS SNVSSSPAEE DIIMDRLVSC
101: GSKRKACSSA TRSPVLAKEH VMAERKRREK LSEKFIALSA LLPGLKKADK ITVLDDAISR VKQLQEQIRK LKDEKEARRE MESMILVKKS KMFFDEEPYV
201: ASSSSSSSSS SSSSCHAKFD QLLPEIEAKV VQKDVLIRIH CEKSKGCMLN ILNTIENLQL RIENSIVLPF GDSTLDITVL AQMEKDFSAS ALKDLIRNLR
301: LSMV
101: GSKRKACSSA TRSPVLAKEH VMAERKRREK LSEKFIALSA LLPGLKKADK ITVLDDAISR VKQLQEQIRK LKDEKEARRE MESMILVKKS KMFFDEEPYV
201: ASSSSSSSSS SSSSCHAKFD QLLPEIEAKV VQKDVLIRIH CEKSKGCMLN ILNTIENLQL RIENSIVLPF GDSTLDITVL AQMEKDFSAS ALKDLIRNLR
301: LSMV
001: MDEDFFLPDF SLVDIDFDFN IYEENNLSPD ESLSNSRRAD QSSKFDHQMH FECLREKPKA AVKPMMKINN KQQLISFDFS SNVISSPAAE EIIMDKLVGR
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQMDKDFSM SILKDLVRNL RLAMV
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQMDKDFSM SILKDLVRNL RLAMV
Arabidopsis Description
BHLH19Uncharacterized protein At2g22760 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.