Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77696 | Canola | nucleus | 25.99 | 81.67 |
| AT5G46830.1 | Thale cress | nucleus | 59.68 | 44.03 |
| Bra017520.1-P | Field mustard | nucleus | 53.05 | 40.16 |
| Bra017523.1-P | Field mustard | nucleus | 52.25 | 38.86 |
| Bra024992.1-P | Field mustard | nucleus | 24.4 | 33.95 |
| Bra010178.1-P | Field mustard | nucleus | 48.81 | 30.67 |
| Bra013264.1-P | Field mustard | nucleus | 24.14 | 30.64 |
| HORVU0Hr1G025420.1 | Barley | cytosol, nucleus | 12.2 | 28.05 |
| KRH75613 | Soybean | nucleus | 45.36 | 26.84 |
| KRH74418 | Soybean | nucleus | 45.36 | 26.64 |
| PGSC0003DMT400002963 | Potato | nucleus | 41.11 | 25.92 |
| Bra024998.1-P | Field mustard | nucleus | 39.52 | 25.69 |
| Solyc08g005050.2.1 | Tomato | nucleus | 31.3 | 25.43 |
| KRH45440 | Soybean | nucleus | 44.03 | 25.38 |
| VIT_02s0012g01320.t01 | Wine grape | nucleus | 44.56 | 25.34 |
| TraesCS1A01G369200.1 | Wheat | nucleus | 13.26 | 25.25 |
| Bra017527.1-P | Field mustard | nucleus | 14.85 | 24.78 |
| Solyc08g076930.1.1 | Tomato | nucleus | 43.77 | 23.95 |
| PGSC0003DMT400045204 | Potato | nucleus | 43.77 | 23.78 |
| Bra039279.1-P | Field mustard | nucleus | 28.38 | 23.31 |
| KRH39540 | Soybean | nucleus | 45.09 | 23.26 |
| Bra038458.1-P | Field mustard | nucleus | 27.59 | 23.06 |
| Bra004532.1-P | Field mustard | nucleus | 29.71 | 23.05 |
| HORVU1Hr1G050560.1 | Barley | nucleus | 40.85 | 22.51 |
| Bra013263.1-P | Field mustard | nucleus | 16.18 | 22.51 |
| TraesCS1B01G208000.1 | Wheat | nucleus | 41.11 | 22.37 |
| KXG39194 | Sorghum | nucleus | 41.64 | 22.21 |
| TraesCS1D01G196900.1 | Wheat | nucleus | 40.85 | 22.16 |
| Zm00001d030028_P001 | Maize | nucleus | 41.11 | 21.99 |
| Bra012720.1-P | Field mustard | nucleus | 26.53 | 21.93 |
| Zm00001d047017_P001 | Maize | nucleus | 40.85 | 21.91 |
| TraesCS1A01G193200.1 | Wheat | nucleus | 39.79 | 21.64 |
| Os10t0575000-01 | Rice | nucleus | 40.05 | 21.6 |
| TraesCS5A01G306400.1 | Wheat | nucleus | 12.2 | 20.63 |
| Zm00001d031717_P001 | Maize | nucleus | 13.0 | 19.29 |
| TraesCS1D01G374800.1 | Wheat | nucleus | 13.53 | 19.25 |
| EER97058 | Sorghum | cytosol, nucleus, plastid | 14.06 | 19.2 |
| TraesCS2A01G448500.1 | Wheat | nucleus | 13.0 | 19.14 |
| Bra033273.1-P | Field mustard | nucleus | 29.44 | 19.01 |
| TraesCS2B01G469300.1 | Wheat | nucleus | 12.73 | 18.75 |
| TraesCS2B01G469200.1 | Wheat | nucleus | 12.2 | 18.7 |
| TraesCSU01G222600.1 | Wheat | nucleus | 12.2 | 18.7 |
| TraesCS1B01G387900.1 | Wheat | nucleus | 11.41 | 17.99 |
| TraesCS7D01G102200.1 | Wheat | nucleus | 12.2 | 17.97 |
| TraesCS5A01G306200.1 | Wheat | nucleus | 13.26 | 17.92 |
| TraesCS5D01G313600.1 | Wheat | nucleus | 13.26 | 17.92 |
| TraesCS5D01G313500.1 | Wheat | nucleus | 13.26 | 17.92 |
| TraesCS5B01G307000.1 | Wheat | nucleus | 13.26 | 17.92 |
| HORVU5Hr1G080080.1 | Barley | nucleus, plastid | 9.81 | 17.62 |
| HORVU5Hr1G080040.1 | Barley | nucleus | 12.47 | 17.54 |
| TraesCS5A01G306700.1 | Wheat | peroxisome | 12.73 | 17.52 |
| TraesCS5B01G306800.1 | Wheat | nucleus | 13.0 | 17.5 |
| OQU80777 | Sorghum | nucleus | 13.0 | 17.5 |
| OQU80776 | Sorghum | nucleus | 12.2 | 17.49 |
| OQU75588 | Sorghum | nucleus | 12.2 | 17.49 |
| TraesCS5D01G313700.1 | Wheat | nucleus | 12.73 | 17.45 |
| TraesCS5A01G306500.1 | Wheat | nucleus | 13.0 | 17.44 |
| Os09t0519100-00 | Rice | nucleus | 12.2 | 17.42 |
| KXG25462 | Sorghum | nucleus | 12.73 | 17.27 |
| TraesCS5B01G307100.1 | Wheat | nucleus | 12.47 | 17.22 |
| TraesCS5D01G313400.1 | Wheat | nucleus | 12.47 | 17.22 |
| OQU86344 | Sorghum | nucleus | 11.67 | 17.19 |
| Os08t0543700-00 | Rice | nucleus, peroxisome, plastid | 11.94 | 17.11 |
| Zm00001d052728_P001 | Maize | nucleus | 12.47 | 17.09 |
| Bra037887.1-P | Field mustard | nucleus | 22.28 | 16.9 |
| TraesCS5B01G306600.1 | Wheat | nucleus | 12.2 | 16.85 |
| Zm00001d006150_P001 | Maize | nucleus | 13.0 | 16.84 |
| TraesCS5A01G306600.1 | Wheat | nucleus | 12.2 | 16.73 |
| EER99201 | Sorghum | nucleus | 13.0 | 16.55 |
| OQU80775 | Sorghum | cytosol, nucleus, peroxisome, plastid | 12.2 | 16.49 |
| OQU80778 | Sorghum | nucleus | 11.67 | 16.3 |
| Zm00001d021164_P001 | Maize | nucleus | 12.47 | 16.21 |
| Bra027653.1-P | Field mustard | nucleus | 24.93 | 15.77 |
| HORVU5Hr1G079900.1 | Barley | cytosol | 11.14 | 15.56 |
| Bra027796.1-P | Field mustard | nucleus | 24.14 | 15.02 |
| Bra025508.1-P | Field mustard | nucleus | 22.55 | 13.51 |
| Bra000970.1-P | Field mustard | nucleus | 22.81 | 13.15 |
| Bra039924.1-P | Field mustard | nucleus | 10.34 | 12.46 |
| Bra013128.1-P | Field mustard | nucleus | 8.49 | 11.98 |
| Bra011790.1-P | Field mustard | nucleus | 10.34 | 11.61 |
| Bra010617.1-P | Field mustard | nucleus | 10.08 | 11.38 |
| Bra030210.1-P | Field mustard | nucleus | 9.28 | 10.87 |
| Bra039927.1-P | Field mustard | nucleus | 9.02 | 10.76 |
| Bra039926.1-P | Field mustard | nucleus | 7.96 | 10.34 |
| Bra030207.1-P | Field mustard | nucleus | 8.75 | 10.12 |
| Bra037343.1-P | Field mustard | cytosol | 18.57 | 9.85 |
| Bra030208.1-P | Field mustard | nucleus | 7.69 | 9.54 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EnsemblPlantsGene:Bra024993 | EnsemblPlants:Bra024993.1 | EnsemblPlants:Bra024993.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | UniProt:M4E887 | InterPro:MYC/MYB_N | PFAM:PF00010 | PFAM:PF14215 | PFscan:PS50888 |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF43 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000253FB10 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
AT5G46830 (E=5e-065) | basic helix-loop-helix (bHLH) family protein
Coordinates
chrA06:-:24572012..24573145
Molecular Weight (calculated)
42770.7 Da
IEP (calculated)
7.118
GRAVY (calculated)
-0.564
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLLNADYDL SMVDAFLNSS SPGETTLKER LHAVVKVTHE AWCYAIFWKP SYHDISGEPV LKWGYGVYKG EDETDKTRRR RKTNAEEKLQ RNKVLRELSL
101: TISGVSFPVK DEDDDVELTD MEWFYLVSMT CSFRSGSGLA GKAFATYNPV WITGLDMING SGCSRANQGG DLGLQTIVCI PSDNGVLELG STEQIRENTG
201: FFRKIRFLFN FKGYGAMNSS KPRPVYPPIQ NNIIFSTATS STSTTVRSSF AEDIKLEESD HSNIDVKAKL KRKRQKKPTH GREEPMNHVE AERLRREKLN
301: QRFYALRAVV PNITGMDKAS LLEDTVRYIN ELKLNAENAE SKKDAVQIQL NKLNEEIAEQ NAVLEFVDAG EKQWRMI
101: TISGVSFPVK DEDDDVELTD MEWFYLVSMT CSFRSGSGLA GKAFATYNPV WITGLDMING SGCSRANQGG DLGLQTIVCI PSDNGVLELG STEQIRENTG
201: FFRKIRFLFN FKGYGAMNSS KPRPVYPPIQ NNIIFSTATS STSTTVRSSF AEDIKLEESD HSNIDVKAKL KRKRQKKPTH GREEPMNHVE AERLRREKLN
301: QRFYALRAVV PNITGMDKAS LLEDTVRYIN ELKLNAENAE SKKDAVQIQL NKLNEEIAEQ NAVLEFVDAG EKQWRMI
001: MINTDDNLLM IEALLTSDPS PPLLPANLSL ETTLPKRLHA VLNGTHEPWS YAIFWKPSYD DFSGEAVLKW GDGVYTGGNE EKTRGRLRRK KTILSSPEEK
101: ERRSNVIREL NLMISGEAFP VVEDDVSDDD DVEVTDMEWF FLVSMTWSFG NGSGLAGKAF ASYNPVLVTG SDLIYGSGCD RAKQGGDVGL QTILCIPSHN
201: GVLELASTEE IRPNSDLFNR IRFLFGGSKY FSGAPNSNSE LFPFQLESSC SSTVTGNPNP SPVYLQNRYN LNFSTSSSTL ARAPCGDVLS FGENVKQSFE
301: NRNPNTYSDQ IQNVVPHATV MLEKKKGKKR GRKPAHGRDK PLNHVEAERM RREKLNHRFY ALRAVVPNVS KMDKTSLLED AVCYINELKS KAENVELEKH
401: AIEIQFNELK EIAGQRNAIP SVCKYEEKAS EMMKIEVKIM ESDDAMVRVE SRKDHHPGAR LMNALMDLEL EVNHASISVM NDLMIQQANV KMGLRIYKQE
501: ELRDLLMSKI S
101: ERRSNVIREL NLMISGEAFP VVEDDVSDDD DVEVTDMEWF FLVSMTWSFG NGSGLAGKAF ASYNPVLVTG SDLIYGSGCD RAKQGGDVGL QTILCIPSHN
201: GVLELASTEE IRPNSDLFNR IRFLFGGSKY FSGAPNSNSE LFPFQLESSC SSTVTGNPNP SPVYLQNRYN LNFSTSSSTL ARAPCGDVLS FGENVKQSFE
301: NRNPNTYSDQ IQNVVPHATV MLEKKKGKKR GRKPAHGRDK PLNHVEAERM RREKLNHRFY ALRAVVPNVS KMDKTSLLED AVCYINELKS KAENVELEKH
401: AIEIQFNELK EIAGQRNAIP SVCKYEEKAS EMMKIEVKIM ESDDAMVRVE SRKDHHPGAR LMNALMDLEL EVNHASISVM NDLMIQQANV KMGLRIYKQE
501: ELRDLLMSKI S
Arabidopsis Description
BHLH28Transcription factor bHLH28 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUK7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.