Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024993.1-P | Field mustard | nucleus | 81.67 | 25.99 |
| CDX77699 | Canola | nucleus | 56.67 | 25.09 |
| CDY33482 | Canola | nucleus | 55.83 | 24.72 |
| CDY70013 | Canola | nucleus | 36.67 | 17.46 |
| CDY03185 | Canola | nucleus | 53.33 | 13.53 |
| CDY59973 | Canola | nucleus | 55.0 | 12.97 |
| CDY03183 | Canola | nucleus | 54.17 | 12.77 |
| CDY58502 | Canola | nucleus | 47.5 | 12.69 |
| CDY35183 | Canola | nucleus | 53.33 | 12.62 |
| CDX77688 | Canola | nucleus | 47.5 | 12.61 |
| AT5G46830.1 | Thale cress | nucleus | 51.67 | 12.13 |
| CDY27319 | Canola | nucleus | 41.67 | 11.29 |
| CDX84081 | Canola | nucleus | 49.17 | 11.15 |
| CDY66312 | Canola | nucleus | 42.5 | 11.14 |
| CDY26910 | Canola | nucleus | 40.83 | 11.06 |
| CDX73261 | Canola | nucleus | 40.83 | 11.06 |
| CDY13737 | Canola | nucleus | 25.83 | 10.51 |
| CDX89627 | Canola | nucleus | 22.5 | 10.11 |
| CDX93135 | Canola | nucleus | 22.5 | 10.11 |
| CDY03195 | Canola | nucleus | 45.83 | 10.09 |
| CDY34468 | Canola | nucleus | 37.5 | 9.98 |
| CDY32242 | Canola | nucleus | 37.5 | 9.98 |
| CDY35179 | Canola | nucleus | 46.67 | 9.96 |
| CDX80023 | Canola | nucleus | 40.0 | 9.86 |
| CDX78808 | Canola | nucleus | 46.67 | 9.67 |
| CDX90525 | Canola | nucleus | 36.67 | 9.65 |
| CDX76899 | Canola | nucleus | 25.83 | 9.6 |
| CDY44507 | Canola | nucleus | 46.67 | 9.56 |
| CDY56874 | Canola | nucleus | 38.33 | 9.37 |
| CDY72121 | Canola | nucleus | 23.33 | 9.09 |
| PGSC0003DMT400002963 | Potato | nucleus | 45.0 | 9.03 |
| CDX89513 | Canola | nucleus | 24.17 | 8.92 |
| CDY25630 | Canola | nucleus | 24.17 | 8.92 |
| CDY52591 | Canola | nucleus | 23.33 | 8.89 |
| CDX69336 | Canola | nucleus | 25.0 | 8.88 |
| CDY09695 | Canola | nucleus | 35.83 | 8.83 |
| KRH75613 | Soybean | nucleus | 46.67 | 8.79 |
| CDY72199 | Canola | nucleus | 24.17 | 8.68 |
| CDY49678 | Canola | nucleus | 24.17 | 8.68 |
| CDX75679 | Canola | nucleus | 24.17 | 8.63 |
| KRH74418 | Soybean | nucleus | 45.83 | 8.57 |
| KRH45440 | Soybean | nucleus | 45.83 | 8.41 |
| CDY25628 | Canola | nucleus | 22.5 | 8.39 |
| VIT_02s0012g01320.t01 | Wine grape | nucleus | 45.83 | 8.3 |
| CDX90021 | Canola | nucleus | 36.67 | 8.15 |
| Solyc08g076930.1.1 | Tomato | nucleus | 46.67 | 8.13 |
| CDX89511 | Canola | nucleus | 21.67 | 8.1 |
| CDY52593 | Canola | nucleus | 19.17 | 8.07 |
| PGSC0003DMT400045204 | Potato | nucleus | 46.67 | 8.07 |
| CDY13735 | Canola | nucleus | 18.33 | 7.61 |
| KRH39540 | Soybean | nucleus | 45.0 | 7.39 |
| CDX89512 | Canola | nucleus | 17.5 | 7.09 |
| CDY25629 | Canola | nucleus | 17.5 | 7.0 |
| CDX86891 | Canola | nucleus | 30.0 | 6.91 |
| CDX99505 | Canola | nucleus | 30.0 | 6.91 |
| Solyc08g005050.2.1 | Tomato | nucleus | 24.17 | 6.25 |
| CDY25513 | Canola | nucleus | 25.0 | 5.2 |
| CDY34367 | Canola | nucleus | 24.17 | 4.87 |
| CDY58950 | Canola | nucleus | 22.5 | 4.68 |
| CDY39747 | Canola | nucleus | 21.67 | 4.65 |
| CDY08314 | Canola | nucleus | 23.33 | 4.63 |
| CDY70506 | Canola | nucleus | 20.0 | 4.49 |
| CDX91907 | Canola | nucleus | 20.0 | 4.41 |
| CDY07214 | Canola | mitochondrion, nucleus | 19.17 | 4.24 |
| CDY51155 | Canola | mitochondrion, nucleus | 18.33 | 4.06 |
| CDX77694 | Canola | nucleus | 4.17 | 1.98 |
| CDY70012 | Canola | nucleus | 0.0 | 0.0 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078CKG4 | EnsemblPlants:CDX77696 | ProteinID:CDX77696 | ProteinID:CDX77696.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00128670001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR11514 |
| PANTHER:PTHR11514:SF47 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE2E20 | InterPro:bHLH_dom | SEG:seg |
Description
BnaC07g19500D
Coordinates
chrLK031812:+:986419..986781
Molecular Weight (calculated)
13828.5 Da
IEP (calculated)
10.239
GRAVY (calculated)
-1.103
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKRKRQKKH KKKPTHGREE PMNHVEAERL RPKKLNQRFY ALRAVVPNIT GMDKASLLED TVRYINELKL NAENAESKKN AVQIQLNKLN EEIAEQNAVL
101: EFVDAGKSSG DEDRREGYGS
101: EFVDAGKSSG DEDRREGYGS
001: MINTDDNLLM IEALLTSDPS PPLLPANLSL ETTLPKRLHA VLNGTHEPWS YAIFWKPSYD DFSGEAVLKW GDGVYTGGNE EKTRGRLRRK KTILSSPEEK
101: ERRSNVIREL NLMISGEAFP VVEDDVSDDD DVEVTDMEWF FLVSMTWSFG NGSGLAGKAF ASYNPVLVTG SDLIYGSGCD RAKQGGDVGL QTILCIPSHN
201: GVLELASTEE IRPNSDLFNR IRFLFGGSKY FSGAPNSNSE LFPFQLESSC SSTVTGNPNP SPVYLQNRYN LNFSTSSSTL ARAPCGDVLS FGENVKQSFE
301: NRNPNTYSDQ IQNVVPHATV MLEKKKGKKR GRKPAHGRDK PLNHVEAERM RREKLNHRFY ALRAVVPNVS KMDKTSLLED AVCYINELKS KAENVELEKH
401: AIEIQFNELK EIAGQRNAIP SVCKYEEKAS EMMKIEVKIM ESDDAMVRVE SRKDHHPGAR LMNALMDLEL EVNHASISVM NDLMIQQANV KMGLRIYKQE
501: ELRDLLMSKI S
101: ERRSNVIREL NLMISGEAFP VVEDDVSDDD DVEVTDMEWF FLVSMTWSFG NGSGLAGKAF ASYNPVLVTG SDLIYGSGCD RAKQGGDVGL QTILCIPSHN
201: GVLELASTEE IRPNSDLFNR IRFLFGGSKY FSGAPNSNSE LFPFQLESSC SSTVTGNPNP SPVYLQNRYN LNFSTSSSTL ARAPCGDVLS FGENVKQSFE
301: NRNPNTYSDQ IQNVVPHATV MLEKKKGKKR GRKPAHGRDK PLNHVEAERM RREKLNHRFY ALRAVVPNVS KMDKTSLLED AVCYINELKS KAENVELEKH
401: AIEIQFNELK EIAGQRNAIP SVCKYEEKAS EMMKIEVKIM ESDDAMVRVE SRKDHHPGAR LMNALMDLEL EVNHASISVM NDLMIQQANV KMGLRIYKQE
501: ELRDLLMSKI S
Arabidopsis Description
BHLH28Transcription factor bHLH28 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUK7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.