Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73261 | Canola | nucleus | 66.92 | 79.91 |
| CDY26910 | Canola | nucleus | 66.73 | 79.68 |
| AT1G32640.1 | Thale cress | nucleus | 82.04 | 69.66 |
| CDY58502 | Canola | nucleus | 47.45 | 55.9 |
| CDX77688 | Canola | nucleus | 47.26 | 55.31 |
| CDX77696 | Canola | nucleus | 11.15 | 49.17 |
| CDY03195 | Canola | nucleus | 49.53 | 48.07 |
| KRH75613 | Soybean | nucleus | 57.09 | 47.41 |
| PGSC0003DMT400002963 | Potato | nucleus | 53.31 | 47.16 |
| Solyc08g005050.2.1 | Tomato | nucleus | 41.21 | 46.98 |
| CDY03185 | Canola | nucleus | 41.97 | 46.93 |
| VIT_02s0012g01320.t01 | Wine grape | nucleus | 58.79 | 46.91 |
| CDY33482 | Canola | nucleus | 24.01 | 46.86 |
| CDY35179 | Canola | nucleus | 49.34 | 46.44 |
| CDY59973 | Canola | nucleus | 44.23 | 45.97 |
| CDX77699 | Canola | nucleus | 23.44 | 45.76 |
| CDY03183 | Canola | nucleus | 43.67 | 45.38 |
| KRH74418 | Soybean | nucleus | 55.01 | 45.33 |
| KRH45440 | Soybean | nucleus | 55.77 | 45.11 |
| CDY35183 | Canola | nucleus | 42.91 | 44.77 |
| Solyc08g076930.1.1 | Tomato | nucleus | 57.66 | 44.27 |
| PGSC0003DMT400045204 | Potato | nucleus | 57.66 | 43.95 |
| CDX78808 | Canola | nucleus | 48.02 | 43.87 |
| CDY44507 | Canola | nucleus | 48.02 | 43.34 |
| KRH39540 | Soybean | nucleus | 56.52 | 40.9 |
| CDX77694 | Canola | nucleus | 18.53 | 38.74 |
| CDY70013 | Canola | nucleus | 15.5 | 32.54 |
| CDY27319 | Canola | nucleus | 26.84 | 32.05 |
| CDY66312 | Canola | nucleus | 26.46 | 30.57 |
| CDX80023 | Canola | nucleus | 26.28 | 28.54 |
| CDY56874 | Canola | nucleus | 26.46 | 28.51 |
| CDY32242 | Canola | nucleus | 23.63 | 27.72 |
| CDY34468 | Canola | nucleus | 23.44 | 27.49 |
| CDX90525 | Canola | nucleus | 22.87 | 26.54 |
| CDX90021 | Canola | nucleus | 25.9 | 25.37 |
| CDY49678 | Canola | nucleus | 14.37 | 22.75 |
| CDY09695 | Canola | nucleus | 20.79 | 22.59 |
| CDY13737 | Canola | nucleus | 12.48 | 22.37 |
| CDX76899 | Canola | nucleus | 13.61 | 22.29 |
| CDY72199 | Canola | nucleus | 13.99 | 22.16 |
| CDX75679 | Canola | nucleus | 13.8 | 21.73 |
| CDX93135 | Canola | nucleus | 10.96 | 21.72 |
| CDX89627 | Canola | nucleus | 10.96 | 21.72 |
| CDX69336 | Canola | nucleus | 13.61 | 21.3 |
| CDY25628 | Canola | nucleus | 12.85 | 21.12 |
| CDX89511 | Canola | nucleus | 12.29 | 20.25 |
| CDY70012 | Canola | nucleus | 10.02 | 19.85 |
| CDX86891 | Canola | nucleus | 19.28 | 19.58 |
| CDX99505 | Canola | nucleus | 19.09 | 19.39 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 6.81 | 18.95 |
| CDY52591 | Canola | nucleus | 11.15 | 18.73 |
| CDY25629 | Canola | nucleus | 10.59 | 18.67 |
| CDX89512 | Canola | nucleus | 10.4 | 18.58 |
| CDX89513 | Canola | nucleus | 11.34 | 18.46 |
| CDY13735 | Canola | nucleus | 10.02 | 18.34 |
| CDY25630 | Canola | nucleus | 11.15 | 18.15 |
| CDY52593 | Canola | nucleus | 9.64 | 17.89 |
| CDY72121 | Canola | nucleus | 9.26 | 15.91 |
| CDY25513 | Canola | nucleus | 16.82 | 15.42 |
| CDY39747 | Canola | nucleus | 16.07 | 15.21 |
| CDY34367 | Canola | nucleus | 16.82 | 14.93 |
| CDY70506 | Canola | nucleus | 14.93 | 14.79 |
| CDY07214 | Canola | mitochondrion, nucleus | 15.12 | 14.76 |
| CDY58950 | Canola | nucleus | 16.07 | 14.73 |
| CDY08314 | Canola | nucleus | 16.82 | 14.71 |
| CDX91907 | Canola | nucleus | 15.12 | 14.71 |
| CDY51155 | Canola | mitochondrion, nucleus | 14.93 | 14.58 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078D415 | EnsemblPlants:CDX84081 | ProteinID:CDX84081 | ProteinID:CDX84081.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00139997001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MYC/MYB_N | PFAM:PF00010 | PFAM:PF14215 |
| PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF43 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EEAE70 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
BnaC08g07580D
Coordinates
chrLK031835:-:794038..795810
Molecular Weight (calculated)
57980.6 Da
IEP (calculated)
6.808
GRAVY (calculated)
-0.502
Length
529 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNLWTSDDN TSMMEAFLSS SDMSALWLPE ASTASATAPA PAGFNQETLQ QRLQALIEGT NEGWTYAIFW QPSYDFSSAS VLGWGDGYYK GEEDKGKPKQ
101: RSIPLPFSTP ADQEYRKKSF ASGAGLAGKA LSTANVVWVS GSDQLSGSSC ERAKQGGVFG MQTIACIPSA NGVVELGSTE QIPPSSDLMS KVRILFNFDV
201: GVADLPGPNW NLDPTQGEND PSIWINDPIG APEPGKGQLF SNPVHSQTQN QKINNNFSPE MNFSKSSTTL VKPRPREILS FGNDGRRSSM NPDPIQFENK
301: RKNSLGLIDD KVLSFGGGGE SDHSDLEAFI VKEIPEKRPK KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN VSKMDKASLL GDAIAYINEL
401: KLKVNKTESE KIHIKNQLEE VKIELAGRKS STCGDLSSSS SSATAMIKPV GMEIEVKVIG WDAMIRVESS KRNHPAARLM SALMDLELEV SHASMSVVND
501: LMIQQATVKM GFRIYTQDQL QASLVSKIG
101: RSIPLPFSTP ADQEYRKKSF ASGAGLAGKA LSTANVVWVS GSDQLSGSSC ERAKQGGVFG MQTIACIPSA NGVVELGSTE QIPPSSDLMS KVRILFNFDV
201: GVADLPGPNW NLDPTQGEND PSIWINDPIG APEPGKGQLF SNPVHSQTQN QKINNNFSPE MNFSKSSTTL VKPRPREILS FGNDGRRSSM NPDPIQFENK
301: RKNSLGLIDD KVLSFGGGGE SDHSDLEAFI VKEIPEKRPK KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN VSKMDKASLL GDAIAYINEL
401: KLKVNKTESE KIHIKNQLEE VKIELAGRKS STCGDLSSSS SSATAMIKPV GMEIEVKVIG WDAMIRVESS KRNHPAARLM SALMDLELEV SHASMSVVND
501: LMIQQATVKM GFRIYTQDQL QASLVSKIG
001: MTDYRLQPTM NLWTTDDNAS MMEAFMSSSD ISTLWPPAST TTTTATTETT PTPAMEIPAQ AGFNQETLQQ RLQALIEGTH EGWTYAIFWQ PSYDFSGASV
101: LGWGDGYYKG EEDKANPRRR SSSPPFSTPA DQEYRKKVLR ELNSLISGGV APSDDAVDEE VTDTEWFFLV SMTQSFACGA GLAGKAFATG NAVWVSGSDQ
201: LSGSGCERAK QGGVFGMHTI ACIPSANGVV EVGSTEPIRQ SSDLINKVRI LFNFDGGAGD LSGLNWNLDP DQGENDPSMW INDPIGTPGS NEPGNGAPSS
301: SSQLFSKSIQ FENGSSSTIT ENPNLDPTPS PVHSQTQNPK FNNTFSRELN FSTSSSTLVK PRSGEILNFG DEGKRSSGNP DPSSYSGQTQ FENKRKRSMV
401: LNEDKVLSFG DKTAGESDHS DLEASVVKEV AVEKRPKKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNVSK MDKASLLGDA IAYINELKSK
501: VVKTESEKLQ IKNQLEEVKL ELAGRKASAS GGDMSSSCSS IKPVGMEIEV KIIGWDAMIR VESSKRNHPA ARLMSALMDL ELEVNHASMS VVNDLMIQQA
601: TVKMGFRIYT QEQLRASLIS KIG
101: LGWGDGYYKG EEDKANPRRR SSSPPFSTPA DQEYRKKVLR ELNSLISGGV APSDDAVDEE VTDTEWFFLV SMTQSFACGA GLAGKAFATG NAVWVSGSDQ
201: LSGSGCERAK QGGVFGMHTI ACIPSANGVV EVGSTEPIRQ SSDLINKVRI LFNFDGGAGD LSGLNWNLDP DQGENDPSMW INDPIGTPGS NEPGNGAPSS
301: SSQLFSKSIQ FENGSSSTIT ENPNLDPTPS PVHSQTQNPK FNNTFSRELN FSTSSSTLVK PRSGEILNFG DEGKRSSGNP DPSSYSGQTQ FENKRKRSMV
401: LNEDKVLSFG DKTAGESDHS DLEASVVKEV AVEKRPKKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNVSK MDKASLLGDA IAYINELKSK
501: VVKTESEKLQ IKNQLEEVKL ELAGRKASAS GGDMSSSCSS IKPVGMEIEV KIIGWDAMIR VESSKRNHPA ARLMSALMDL ELEVNHASMS VVNDLMIQQA
601: TVKMGFRIYT QEQLRASLIS KIG
Arabidopsis Description
MYC2ZBF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W7C3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.