CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73261
CDX74819
CDX80461
CDX84081
CDX90021
CDX90230
CDX92171
CDX93223
CDX93225
CDX95810
CDX99884
CDY05402
CDY05452
CDY07040
CDY07041
CDY20501
CDY24941
CDY26288
CDY26697
CDY26910
CDY41023
CDY51470
CDY60996
CDY69515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19180.1	CDX90021	AT1G01260.1	21798944
AT1G19180.1	CDY26697	AT1G19180.1	19309455
AT1G19180.1	CDY41023	AT1G19180.1	19309455
AT1G19180.1	CDY26697	AT1G19180.1	21798944
AT1G19180.1	CDY41023	AT1G19180.1	21798944
AT1G19180.1	CDX90230	AT1G30135.1	19309455
AT1G19180.1	CDX99884	AT1G30135.1	19309455
AT1G19180.1	CDY26288	AT1G30135.1	19309455
AT1G19180.1	CDY51470	AT1G30135.1	19309455
AT1G19180.1	CDX73261	AT1G32640.1	18547396
AT1G19180.1	CDX84081	AT1G32640.1	18547396
AT1G19180.1	CDY26910	AT1G32640.1	18547396
AT1G19180.1	CDX73261	AT1G32640.1	19309455
AT1G19180.1	CDX84081	AT1G32640.1	19309455
AT1G19180.1	CDY26910	AT1G32640.1	19309455
AT1G19180.1	CDX74819	AT2G39940.1	17637677
AT1G19180.1	CDX93223	AT2G39940.1	17637677
AT1G19180.1	CDX93225	AT2G39940.1	17637677
AT1G19180.1	CDY07040	AT2G39940.1	17637677
AT1G19180.1	CDY07041	AT2G39940.1	17637677
AT1G19180.1	CDY20501	AT2G39940.1	17637677
AT1G19180.1	CDY24941	AT2G39940.1	17637677
AT1G19180.1	CDY60996	AT2G39940.1	17637677
AT1G19180.1	CDX74819	AT2G39940.1	18547396
AT1G19180.1	CDX93223	AT2G39940.1	18547396
AT1G19180.1	CDX93225	AT2G39940.1	18547396
AT1G19180.1	CDY07040	AT2G39940.1	18547396
AT1G19180.1	CDY07041	AT2G39940.1	18547396
AT1G19180.1	CDY20501	AT2G39940.1	18547396
AT1G19180.1	CDY24941	AT2G39940.1	18547396
AT1G19180.1	CDY60996	AT2G39940.1	18547396
AT1G19180.1	CDX92171	AT3G17860.1	19309455
AT1G19180.1	CDX95810	AT3G17860.1	19309455
AT1G19180.1	CDX80461	AT5G24660.1	21798944
AT1G19180.1	CDY05402	AT5G24660.1	21798944
AT1G19180.1	CDY05452	AT5G24660.1	21798944
AT1G19180.1	CDY69515	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025713.1-P	Field mustard	plastid	96.44	96.06
CDY41023	Canola	plastid	93.28	92.91
AT1G19180.1	Thale cress	cytosol	70.36	70.36
CDX96675	Canola	plastid	69.96	67.3
CDX83781	Canola	plastid	69.17	66.29
CDY37269	Canola	nucleus	51.38	54.17
CDY46022	Canola	nucleus	48.62	51.25
CDY45408	Canola	cytosol	45.85	47.35
CDX73127	Canola	cytosol	45.85	47.35
CDX73289	Canola	cytosol	34.39	46.28
Solyc07g042170.2.1	Tomato	cytosol	35.18	41.2
VIT_11s0016g00710.t01	Wine grape	cytosol, plastid	43.08	40.67
PGSC0003DMT400075155	Potato	nucleus	33.99	40.0
CDX85865	Canola	cytosol	34.78	39.29
CDX68156	Canola	cytosol	25.69	35.91
PGSC0003DMT400007592	Potato	nucleus	34.39	34.25
GSMUA_Achr6P31050_001	Banana	cytosol	28.46	33.8
Solyc12g009220.1.1	Tomato	nucleus	33.6	33.73
EER97533	Sorghum	plastid	31.23	33.62
HORVU2Hr1G031310.9	Barley	cytosol, mitochondrion, plastid	31.62	33.47
CDX81917	Canola	plastid	66.4	33.07
GSMUA_Achr2P21770_001	Banana	mitochondrion	28.85	33.03
CDY21679	Canola	plastid	70.75	32.84
TraesCS2B01G195600.1	Wheat	plastid	29.25	32.03
Os07t0615200-01	Rice	mitochondrion	30.83	31.97
Zm00001d022139_P001	Maize	plastid	28.85	31.33
TraesCS2D01G176800.1	Wheat	plastid	28.46	31.17
Os03t0402800-01	Rice	plastid	27.67	30.7
GSMUA_Achr3P05920_001	Banana	nucleus	30.04	30.28
EER92157	Sorghum	plastid	27.27	30.26
GSMUA_Achr9P14370_001	Banana	cytosol	31.62	30.19
GSMUA_Achr3P02140_001	Banana	mitochondrion	24.9	30.14
GSMUA_Achr5P22110_001	Banana	mitochondrion	29.25	29.96
TraesCS2A01G169300.1	Wheat	plastid	26.48	29.0
GSMUA_Achr7P19850_001	Banana	cytosol	27.67	28.93
GSMUA_Achr5P05170_001	Banana	cytosol, mitochondrion, nucleus	27.27	28.63
Zm00001d029448_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	25.69	28.51
GSMUA_AchrUn_...	Banana	nucleus	27.27	27.94
Zm00001d006860_P001	Maize	plastid	29.25	27.82
EER98969	Sorghum	cytosol	24.11	27.6
Os09t0439200-01	Rice	plastid	25.3	27.59
GSMUA_Achr11P...	Banana	cytosol	25.3	27.59
GSMUA_Achr10P...	Banana	cytosol	17.39	27.16
TraesCS5D01G219300.2	Wheat	nucleus	24.51	26.96
GSMUA_Achr8P16780_001	Banana	cytosol	26.88	26.88
Zm00001d005813_P002	Maize	cytosol, plastid	24.11	26.87
TraesCS5B01G211000.1	Wheat	nucleus	24.11	26.52
Zm00001d020614_P001	Maize	cytosol, plastid	22.13	25.69
GSMUA_Achr3P10270_001	Banana	cytosol	22.13	24.78
CDY71173	Canola	nucleus	26.48	24.63
CDY16574	Canola	cytoskeleton, cytosol, nucleus	18.97	24.12
CDX96772	Canola	nucleus	25.3	23.97
CDY09086	Canola	cytosol	20.55	23.53
CDX92427	Canola	cytosol	18.58	23.38
CDX72916	Canola	nucleus	24.9	23.25
CDY03638	Canola	nucleus	24.51	22.71
GSMUA_Achr1P21870_001	Banana	mitochondrion	31.62	22.66
CDY71875	Canola	cytosol	19.37	21.78
CDX96409	Canola	nucleus	23.32	21.53
CDY26248	Canola	mitochondrion, nucleus	22.53	21.51
TraesCS5A01G212800.1	Wheat	plastid	24.9	21.28
CDY48300	Canola	cytosol, mitochondrion, nucleus, vacuole	24.11	21.03
HORVU5Hr1G062290.6	Barley	mitochondrion, plastid	24.51	21.02
CDX81823	Canola	plastid	26.88	20.48

Protein Annotations

EnsemblPlants:CDY26697	EnsemblPlantsGene:GSBRNA2T00035595001	InterPro:CCT_CS	InterPro:IPR010399	InterPro:Tify_dom	PANTHER:PTHR33077
PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	ProteinID:CDY26697	ProteinID:CDY26697.1	SEG:seg
SMART:SM00979	UniParc:UPI0004EE41E9	UniProt:A0A078GNC6	MapMan:11.7.2.1.2	MapMan:15.5.45	:

Description

BnaA06g13250DBnaA06g13250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNC6]

Coordinates

chrLK032193:-:183328..184875

Molecular Weight (calculated)

27214.4 Da

IEP (calculated)

10.511

GRAVY (calculated)

-0.483

Length

253 amino acids

Sequence
(BLAST)

001: MSSSMECSAT RRSSSGKPSF SLTCSRLSQY LKENGSFGDL SLGMSCKPET NGMSRKPTTT MSLFPCEASN VGSMAAAQDV KPKNLFPRQP SFSSSSSSIP
101: KEVVPKMTQT TTTRSLKPEP QTAPLTIFYG GQVIVFNDFS AEKAKEVMNL ASKGTANTFT GFKSTLNNNI APTPNQVPHL MKTASQDPKQ TSSAAMACEL
201: PIARRASLHR FLAKRKDRVT SKAPYQLSDP AKAFSKPQTG NSTTSWLGLA ADM

Best Arabidopsis Sequence Match ( AT1G19180.3 )
(BLAST)

001: MSSSMECSEF VGSRRFTGKK PSFSQTCSRL SQYLKENGSF GDLSLGMACK PDVNGTLGNS RQPTTTMSLF PCEASNMDSM VQDVKPTNLF PRQPSFSSSS
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI

Arabidopsis Description

TIFY10ATIFY10A [Source:UniProtKB/TrEMBL;Acc:A0A178W7G1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.