Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009783.1-P | Field mustard | cytosol, nucleus, plastid | 100.0 | 100.0 |
| CDX80461 | Canola | cytosol, nucleus, plastid | 91.4 | 91.4 |
| AT5G24660.1 | Thale cress | cytosol, nucleus, plastid | 87.1 | 86.17 |
| AT5G24655.1 | Thale cress | cytosol | 82.8 | 83.7 |
| CDY05452 | Canola | cytosol, nucleus, plastid | 84.95 | 81.44 |
| CDY05402 | Canola | nucleus | 83.87 | 80.41 |
| CDY08146 | Canola | cytosol | 72.04 | 69.07 |
| CDY08148 | Canola | cytosol | 64.52 | 64.52 |
| Solyc03g096780.1.1 | Tomato | nucleus | 45.16 | 37.17 |
| PGSC0003DMT400001474 | Potato | plastid | 46.24 | 36.75 |
| KRH53667 | Soybean | cytosol, extracellular, nucleus | 47.31 | 36.67 |
| PGSC0003DMT400001476 | Potato | plastid | 44.09 | 36.61 |
| Solyc03g096760.1.1 | Tomato | plastid | 44.09 | 36.61 |
| PGSC0003DMT400001475 | Potato | plastid | 45.16 | 35.59 |
| KRH64261 | Soybean | nucleus | 46.24 | 35.54 |
| Solyc03g096770.1.1 | Tomato | nucleus | 43.01 | 34.78 |
| PGSC0003DMT400069515 | Potato | cytosol | 41.94 | 34.51 |
| Solyc06g072990.1.1 | Tomato | cytosol, plastid | 40.86 | 33.33 |
| KRH16959 | Soybean | nucleus | 39.78 | 31.62 |
| VIT_16s0098g00600.t01 | Wine grape | cytosol, nucleus, plastid | 45.16 | 30.66 |
Protein Annotations
| EnsemblPlants:CDY69515 | EnsemblPlantsGene:GSBRNA2T00088473001 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0033554 |
| ncoils:Coil | PANTHER:PTHR34283 | PANTHER:PTHR34283:SF1 | ProteinID:CDY69515 | ProteinID:CDY69515.1 | UniParc:UPI000253F1FE |
| UniProt:A0A078JSW9 | MapMan:35.1 | : | : | : | : |
Description
BnaAnng30680DBnaAnng30680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JSW9]
Coordinates
chrLK039598:+:603..1098
Molecular Weight (calculated)
10585.5 Da
IEP (calculated)
4.421
GRAVY (calculated)
-0.606
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MGKGGNLVTV AASEVEELRR KNGEMEKAVE EMRKEMLQLW RRTQVAEEAE ERLCSQLAEL EAESLDQARD YQSRILFLVN ELSRLSSSDL ASP
1: MGKGGNYVTV AASEVDELRR KNGEMEKAVE EMKKEMLQLW RRTQVAEEAE ERLCSQLAEL EAESLDQARD YHSRIIFLMN ELSRLSSDSA SASP
Arabidopsis Description
LSU2Protein RESPONSE TO LOW SULFUR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR9]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.