CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67412
CDX72718
CDX83145
CDX90305
CDX90483
CDX96185
CDY02176
CDY09638
CDY12116
CDY22394
CDY23090
CDY27030
CDY34012
CDY35590
CDY42967
CDY49079
CDY49453
CDY56908
CDY68624

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39100.1	CDX83145	AT4G08150.1	21798944
AT2G39100.1	CDY34012	AT4G08150.1	21798944
AT2G39100.1	CDY68624	AT4G08150.1	21798944
AT2G39100.1	CDX90483	AT4G17220.1	21798944
AT2G39100.1	CDY09638	AT4G17220.1	21798944
AT2G39100.1	CDY35590	AT4G17220.1	21798944
AT2G39100.1	CDY42967	AT4G17220.1	21798944
AT2G39100.1	CDX72718	AT4G39050.1	21798944
AT2G39100.1	CDX90305	AT4G39050.1	21798944
AT2G39100.1	CDY12116	AT4G39050.1	21798944
AT2G39100.1	CDY22394	AT4G39050.1	21798944
AT2G39100.1	CDX67412	AT5G38600.1	21798944
AT2G39100.1	CDY49079	AT5G38600.1	21798944
AT2G39100.1	CDX96185	AT5G53060.1	21798944
AT2G39100.1	CDY27030	AT5G53060.1	21798944
AT2G39100.1	CDY49453	AT5G53060.1	21798944
AT2G39100.1	CDY56908	AT5G53060.1	21798944
AT2G39100.1	CDY02176	AT5G61010.1	21798944
AT2G39100.1	CDY23090	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017091.1-P	Field mustard	nucleus	98.48	91.23
CDX93287	Canola	cytosol, plastid	93.94	79.74
AT2G39100.1	Thale cress	plastid	70.83	63.18
PGSC0003DMT400079098	Potato	mitochondrion	43.94	42.65
Solyc06g054580.2.1	Tomato	nucleus	43.56	42.28
VIT_05s0020g01720.t01	Wine grape	plastid	48.11	37.35

Protein Annotations

EnsemblPlants:CDY18354	EnsemblPlantsGene:GSBRNA2T00005334001	Gene3D:3.30.40.10	GO:A0A078FYV1	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR22937	PANTHER:PTHR22937:SF95	PFAM:PF13639
PFscan:PS50089	ProteinID:CDY18354	ProteinID:CDY18354.1	ScanProsite:PS00518	SEG:seg	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI0004EEDCB5	UniProt:A0A078FYV1	MapMan:35.2	:	:

Description

BnaA04g22330DBnaA04g22330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYV1]

Coordinates

chrLK032085:-:9977..11241

Molecular Weight (calculated)

30769.9 Da

IEP (calculated)

10.167

GRAVY (calculated)

-0.549

Length

264 amino acids

Sequence
(BLAST)

001: MPTTSSSRSI GKRNSLPRIG ENFPERAILA AVKEQSCPIC LENLTHRRAA VIPSCRHGYC LGCIRKWSGL KRSCPLCNAR FDSWLVVNDL ASRRFREERL
101: PPLRDRETVT YHRRRSMDVL ESSSSRRSRP LPWRRSFGRP GSVPDHVILE RKLRWRASIY DRQLRAVRLH SRPSLLLVND DHTKARIIER IEPWLRREVQ
201: AVLGDPDPSI IVHFASALFI KRLERENNGQ SGQEDIFWHE LRCFAESSLT METYDAVVEY IEVE

Best Arabidopsis Sequence Match ( AT2G39100.1 )
(BLAST)

001: MPPLPSSTAP SSSRHLRSPE SIAKFAGRAI FPALQGKSCP ICLENLTERR SAAVITVCKH GYCLACIRKW SSFKRNCPLC NTRFDSWFIV SDFASRKYHK
101: EQLPILRDRE TLTYHRNNPS DRRRIIQRSR DVLENSSSRS RPLPWRRSFG RPGSVPDSVI FQRKLQWRAS IYTKQLRAVR LHSRRLELSL AVNDYTKAKI
201: TERIEPWIRR ELQAVLGDPD PSVIVHFASA LFIKRLEREN NRQTGQTGML VEDEVSSLRK FLSDKVDIFW HELRCFAESI LTMETYDAVV EYNEVE

Arabidopsis Description

Putative RING zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ73]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.