CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71815
CDX80910
CDX92648
CDY03428
CDY05002
CDY11025
CDY11283
CDY34301
CDY41170
CDY56997
CDY58906
CDY72512

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53060.1	CDX71815	AT3G60360.1	21798944
AT5G53060.1	CDY41170	AT3G60360.1	21798944
AT5G53060.1	CDY56997	AT3G60360.1	21798944
AT5G53060.1	CDY58906	AT3G60360.1	21798944
AT5G53060.1	CDX92648	AT4G24680.1	21798944
AT5G53060.1	CDY03428	AT4G24680.1	21798944
AT5G53060.1	CDY11025	AT4G24680.1	21798944
AT5G53060.1	CDY34301	AT4G24680.1	21798944
AT5G53060.1	CDX80910	AT5G04280.1	21798944
AT5G53060.1	CDY11283	AT5G04280.1	21798944
AT5G53060.1	CDY05002	AT5G06770.1	21798944
AT5G53060.1	CDY72512	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27030	Canola	nucleus	94.54	91.13
CDY56908	Canola	nucleus	83.62	84.28
CDY49453	Canola	nucleus	84.09	83.96
AT5G53060.1	Thale cress	nucleus	83.78	82.36
KRH64403	Soybean	nucleus	63.34	63.04
KRH53532	Soybean	nucleus	63.18	62.6
VIT_16s0098g01660.t01	Wine grape	nucleus	60.84	59.0
Solyc03g082980.2.1	Tomato	nucleus	60.22	57.78
PGSC0003DMT400047665	Potato	nucleus	59.91	55.98
HORVU7Hr1G082230.1	Barley	nucleus	47.11	48.24
GSMUA_Achr2P15270_001	Banana	nucleus	51.33	47.34
TraesCS7A01G333800.1	Wheat	nucleus	48.36	46.41
TraesCS7D01G341400.1	Wheat	nucleus	48.05	45.77
Os06t0342500-01	Rice	cytosol	47.11	45.62
KXG20038	Sorghum	nucleus	46.8	44.91
Zm00001d046033_P001	Maize	nucleus	46.02	44.23
TraesCS7B01G245400.2	Wheat	nucleus	48.05	43.38
Zm00001d037055_P003	Maize	nucleus	45.09	39.05
CDY49107	Canola	nucleus	21.06	28.42
CDY39336	Canola	mitochondrion	20.75	28.12
CDX81615	Canola	cytosol	20.12	28.1
CDX99471	Canola	nucleus	9.36	27.91
CDY33769	Canola	nucleus	21.06	27.84
CDY03018	Canola	nucleus	19.97	27.35
CDY60930	Canola	nucleus	22.0	26.5
CDX69536	Canola	nucleus	21.68	26.13
CDY45180	Canola	cytosol	16.85	25.53
CDX78846	Canola	nucleus	22.62	25.26
CDX99470	Canola	nucleus	10.45	24.72
CDX70604	Canola	nucleus	21.53	23.79
CDX77643	Canola	nucleus	23.4	23.47
CDY33460	Canola	nucleus	23.4	23.4
CDX78623	Canola	nucleus	21.53	23.0
CDX84522	Canola	nucleus	25.9	22.4
CDY46555	Canola	plastid	20.28	22.38
CDY52947	Canola	plastid	19.97	22.22
CDY51849	Canola	cytosol	3.59	21.7
CDY13742	Canola	mitochondrion	19.81	20.29
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	19.66	19.97
CDX89490	Canola	cytosol	18.41	19.06
CDY25609	Canola	cytosol	17.94	18.52
CDX89376	Canola	cytosol	11.08	16.71
CDY65294	Canola	cytosol	11.08	16.17
CDX92741	Canola	cytosol	11.54	15.01
CDY42768	Canola	cytosol	11.54	15.01
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	11.23	15.0
CDY64706	Canola	nucleus	9.36	14.85
CDY40663	Canola	cytosol	11.7	13.32
CDX74180	Canola	cytosol	11.7	13.32

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:A0A078E2P7	EnsemblPlants:CDX96185	ProteinID:CDX96185
ProteinID:CDX96185.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00102254001
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF134	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0004EE4345	SEG:seg

Description

BnaC02g14660D

Coordinates

chrLK031893:+:358389..361552

Molecular Weight (calculated)

70485.2 Da

IEP (calculated)

5.823

GRAVY (calculated)

-0.472

Length

641 amino acids

Sequence
(BLAST)

001: MERSRSKRNY HYDQDYDGDS IARSKPRFNN NYGGGGGNNR YRGGGVNGRP SKSHPETMAT TTYRVLCHDA KAGGVIGKSG SIIKSIRQHT GAWINVHELV
101: PGDAERIIEI SDNRRRDPDG RMPSFSPAQE ALFSVHDRIL ESEPQFGAED EEDYGGVRAG GGRVVTRLVV SKLHVGCLLG KGGKIIEQMR IETKTHIRIL
201: PRETNLPRCV SLSEEIVQIV GEAAAVRNAL AIVSSRLRES QHRDRSHLQG RVHSPERPFS PADDYIPQQR RQSSDRFHFR NNSFSSRQSN YAEEEAPVGE
301: NVQPFYAEEL VFRILCPVDK IVKVVGEAEG IVDLLQNEIG VDVRVSEPVA GSDEQIITIS SEEAPDDQLF PAQEALLHIQ TRIVDRVPDE DNIITTRLIV
401: SSRDSVCLEG KAGSVSEISR VTGASVKILP REEMPRCVSI NDVVVQIAGE IRAARDALVE LTLRLRSHMY RELSQKETPP ASTSTTGPLE GVAGVIEVAS
501: SNNTTQSREG LSIAPQYKES GGPVAKVGES EQRDEVPNTA SRMSVPLVTR STLEVVLPDQ VIPKLVTKSR NKLAQISEWS GASVTLVEDR PGETQNVIRI
601: SGTPEQAERA QCLLQGFILS MIEEQAFYPP DGDVFGQLVP G

Best Arabidopsis Sequence Match ( AT5G53060.1 )
(BLAST)

001: MERSRSKRNY HYDQDYDGDS MPRSKPRYNN NYHFGGGGGG NNRYRGGGGG GGGNGRPSKS HPETMATTTY RILCHDAKAG GVIGKSGTII KSIRQHTGAW
101: INVHELVPGD AERIIEISDN RRRDPDGRMP SFSPAQEALF SVHDRILESE AQFGYGGPPP EEEEDYGGVR PGGGRVVTRL VVSRMHVGCL LGKGGKIIEQ
201: MRIETKTHIR ILPRESNLPR CVSLSEEIVQ IVGELNAVKN ALAIVSSRLR ESQHRDRSNF QGRSHSPERS FAAAGDDYMP QLRRQSSDRF PRGNFRNNNF
301: SSRQSNYAEE APAVPVGENV YSEELVFQIL CPADKIVRVV GESQGIIDLL QNEIGVDVRV SDPVAGSDEQ IITISSEEAP DDPFFPAQEA LLHIQTQIID
401: LIPDKDNLIT TRLLVPSRDS ICLEGKAGSV SEISRLTGTS VQILAREEIP RCASINDVVI QITGEIRAAR EALVELTLLL RSHMFKELSQ KETPPASTST
501: TGPLEGVAGV MEVASSNNTI QSREGPTSSN LNLQQVSTIL PQFKEGFGSV AKAGESEHRE EVPVTTSRMA VPLVTRSTLE VVLPEAVVPK LVTKSRNKLA
601: QISEWSGASV TIVEDRPEET QNIIRISGTP EQAERAQSLL QGFILSIQED GP

Arabidopsis Description

RCF3RNA-binding KH domain-containing protein RCF3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.