Factsheet for HORVU7Hr1G082230.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G079290.1
HORVU5Hr1G022070.5
HORVU6Hr1G025870.1
HORVU6Hr1G033840.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53060.1	HORVU3Hr1G079290.1	AT3G60360.1	21798944
AT5G53060.1	HORVU5Hr1G022070.5	AT4G24680.1	21798944
AT5G53060.1	HORVU6Hr1G025870.1	AT5G06770.1	21798944
AT5G53060.1	HORVU6Hr1G033840.5	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G333800.1	Wheat	nucleus	96.65	90.57
TraesCS7D01G341400.1	Wheat	nucleus	96.96	90.19
TraesCS7B01G245400.2	Wheat	nucleus	96.33	84.93
Os06t0342500-01	Rice	cytosol	82.59	78.1
KXG20038	Sorghum	nucleus	82.59	77.4
Zm00001d046033_P001	Maize	nucleus	80.67	75.71
Zm00001d037055_P003	Maize	nucleus	80.03	67.7
GSMUA_Achr2P15270_001	Banana	nucleus	61.98	55.83
KRH64403	Soybean	nucleus	50.96	49.53
KRH53532	Soybean	nucleus	51.12	49.46
VIT_16s0098g01660.t01	Wine grape	nucleus	50.96	48.26
AT5G53060.1	Thale cress	nucleus	49.52	47.55
CDX96185	Canola	nucleus	48.24	47.11
Solyc03g082980.2.1	Tomato	nucleus	49.84	46.71
Bra022624.1-P	Field mustard	nucleus	48.56	45.99
CDY27030	Canola	nucleus	48.56	45.71
Bra003085.1-P	Field mustard	nucleus	46.33	45.38
PGSC0003DMT400047665	Potato	nucleus	49.52	45.19
CDY56908	Canola	nucleus	45.37	44.65
CDY49453	Canola	nucleus	45.69	44.55
HORVU5Hr1G075110.3	Barley	mitochondrion	22.68	22.05
HORVU0Hr1G007380.3	Barley	mitochondrion, nucleus	22.04	21.84
HORVU5Hr1G121900.1	Barley	nucleus	21.73	21.52
HORVU4Hr1G049680.1	Barley	nucleus	18.85	20.27
HORVU1Hr1G036300.1	Barley	cytosol	5.75	19.78
HORVU1Hr1G043680.7	Barley	nucleus	24.28	18.65
HORVU3Hr1G057270.16	Barley	plastid	22.2	17.91
HORVU4Hr1G011610.11	Barley	cytoskeleton, cytosol, nucleus	14.7	16.97
HORVU1Hr1G055480.1	Barley	plastid	13.26	16.53
HORVU6Hr1G014510.1	Barley	cytosol, mitochondrion, nucleus, plastid	9.74	12.32
HORVU1Hr1G036280.1	Barley	cytosol	6.23	9.51

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	UniProt:A0A287X3H0	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0006139	GO:GO:0006412	GO:GO:0006950	GO:GO:0006970	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607
GO:GO:0009628	GO:GO:0009719	GO:GO:0009867	GO:GO:0009987	GO:GO:0010286	GO:GO:0010445
GO:GO:0010468	GO:GO:0019538	GO:GO:0031053	GO:GO:0040029	GO:GO:0070878	GO:GO:1900150
EnsemblPlantsGene:HORVU7Hr1G082230	EnsemblPlants:HORVU7Hr1G082230.1	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF134	SMART:SM00322	SUPFAM:SSF54791
UniParc:UPI000B477CB4	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr7H:+:492195041..492203200

Molecular Weight (calculated)

68218.8 Da

IEP (calculated)

5.571

GRAVY (calculated)

-0.490

Length

626 amino acids

Sequence
(BLAST)

001: MDRSRSKRGY HYDQDSPPPR SKPRFDRRGG GGGXSAAAGG GGPGQTTSFR ILCPESKAYG FPASFINNAQ DDSGAIITIH PPFPGDPVRV IETADGALRE
101: ADGRPPMFSP AQEALLMVHR RILETQPDDG DEDGEYGPRG KDARDRGKVT TRLIVPRQHV GCLLGKGGKI IEQMRSETKT HIRILPREQN MPRCLSLSEE
201: VVQVVGEGNN VKKAVAIISD RLKESLHRDR GPFLRGRNSP EHRISQADEY LGGGQQMPAF EEPYPRFDQI RNNGSMEPPG YEFDSNGSKF NEHPEIPYDE
301: IIFRILCPND KAISLVGSRD GIIDMLQAEV GVDVRLTDLI AGSDERTLII TSREGPDHEL FPAQEALLHI QTFIVDLGPD KDNIITTRLL VPSSEIACFE
401: GRDGSLSDIQ RQTSANVQIL PREELPSCAL ESDELIQIVG EIRAARNALM QVTTKLRSYI YREMPAPIQI GGINVHGSIS PAKGSPRGLY AGNDLPMPIY
501: QQAPQMATSW HSKDSGLSAS GSFEQGSSIN DDMRQSNTKR YAVPLVTRST LEVVIPQSAV ASLSMRAGSK LAQISEMSGA SVTLAEERPG VTEKVVRISG
601: TPEQADKAQS LLQGFILSIQ DDIPSG

Best Arabidopsis Sequence Match ( AT5G53060.1 )
(BLAST)

001: MERSRSKRNY HYDQDYDGDS MPRSKPRYNN NYHFGGGGGG NNRYRGGGGG GGGNGRPSKS HPETMATTTY RILCHDAKAG GVIGKSGTII KSIRQHTGAW
101: INVHELVPGD AERIIEISDN RRRDPDGRMP SFSPAQEALF SVHDRILESE AQFGYGGPPP EEEEDYGGVR PGGGRVVTRL VVSRMHVGCL LGKGGKIIEQ
201: MRIETKTHIR ILPRESNLPR CVSLSEEIVQ IVGELNAVKN ALAIVSSRLR ESQHRDRSNF QGRSHSPERS FAAAGDDYMP QLRRQSSDRF PRGNFRNNNF
301: SSRQSNYAEE APAVPVGENV YSEELVFQIL CPADKIVRVV GESQGIIDLL QNEIGVDVRV SDPVAGSDEQ IITISSEEAP DDPFFPAQEA LLHIQTQIID
401: LIPDKDNLIT TRLLVPSRDS ICLEGKAGSV SEISRLTGTS VQILAREEIP RCASINDVVI QITGEIRAAR EALVELTLLL RSHMFKELSQ KETPPASTST
501: TGPLEGVAGV MEVASSNNTI QSREGPTSSN LNLQQVSTIL PQFKEGFGSV AKAGESEHRE EVPVTTSRMA VPLVTRSTLE VVLPEAVVPK LVTKSRNKLA
601: QISEWSGASV TIVEDRPEET QNIIRISGTP EQAERAQSLL QGFILSIQED GP

Arabidopsis Description

RCF3RNA-binding KH domain-containing protein RCF3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.