Factsheet for HORVU5Hr1G121900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G538200.3	Wheat	nucleus	93.83	94.13
TraesCS5B01G551800.1	Wheat	nucleus	93.67	93.82
TraesCS4A01G333900.1	Wheat	nucleus	93.67	93.67
HORVU0Hr1G007380.3	Barley	mitochondrion, nucleus	89.87	89.87
OQU80050	Sorghum	nucleus	71.84	72.18
Zm00001d024270_P001	Maize	nucleus	71.2	71.2
Zm00001d049390_P001	Maize	nucleus	68.99	69.1
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	55.06	53.46
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	52.06	52.81
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	57.44	52.53
Solyc08g048500.2.1	Tomato	nucleus	51.11	52.35
PGSC0003DMT400076798	Potato	nucleus	50.95	51.94
KRH42565	Soybean	nucleus	50.95	51.52
KRH58669	Soybean	endoplasmic reticulum, nucleus	49.84	50.72
CDX99470	Canola	nucleus	20.41	47.6
CDX77643	Canola	nucleus	46.52	46.01
CDY33460	Canola	nucleus	46.2	45.55
Bra025032.1-P	Field mustard	nucleus	46.52	45.51
AT4G18375.2	Thale cress	nucleus	43.2	45.05
CDX78846	Canola	nucleus	40.19	44.25
Bra013302.1-P	Field mustard	nucleus	40.35	43.52
CDX99471	Canola	nucleus	14.72	43.26
AT5G46190.2	Thale cress	cytosol	45.89	42.09
HORVU4Hr1G049680.1	Barley	nucleus	24.68	26.8
HORVU5Hr1G075110.3	Barley	mitochondrion	22.78	22.36
HORVU7Hr1G082230.1	Barley	nucleus	21.52	21.73
HORVU1Hr1G036300.1	Barley	cytosol	6.17	21.43
HORVU1Hr1G043680.7	Barley	nucleus	27.06	20.98
HORVU3Hr1G057270.16	Barley	plastid	24.05	19.59
HORVU1Hr1G055480.1	Barley	plastid	14.72	18.53
HORVU4Hr1G011610.11	Barley	cytoskeleton, cytosol, nucleus	14.24	16.61
HORVU6Hr1G014510.1	Barley	cytosol, mitochondrion, nucleus, plastid	11.55	14.75
HORVU1Hr1G036280.1	Barley	cytosol	8.23	12.68

Protein Annotations

EnsemblPlants:HORVU5Hr1G121900.1	EnsemblPlantsGene:HORVU5Hr1G121900	Gene3D:3.30.1370.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288
PANTHER:PTHR10288:SF137	PFAM:PF00013	PFscan:PS50084	SEG:seg	SMART:SM00322	SUPFAM:SSF54791
UniParc:UPI00029558B9	UniProt:M0WXZ5	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:660978582..660986770

Molecular Weight (calculated)

68618.1 Da

IEP (calculated)

8.215

GRAVY (calculated)

-0.329

Length

632 amino acids

Sequence
(BLAST)

001: MNPSGKRTGQ HRDHDREDRD QKRRPAHTQE TSGMAELVVY RILCPDKVIG SVIGKGGKVI NSIRQQTNAK VKVVDPYPGA DKRVILVYCY VKHRDVMLSD
101: INADDDDDRE PVCAAQNALL KVHDAIVGAL AVTDDSDDKE ANILVPASQA ASVIGKSGSV IKKLRSVSKS FIKVKPKDPS DVTHSCAMSF DNFVQITGDA
201: RAVKKALFAV STIMYKCPSK ENIPLETSID ELPPTIILPS ELPVYPASSL YSVSDASMPS GHPSLSILGA TSRGSHVPDF TVPIDTHGGL PIYQSMVPAV
301: PTYNTPKCSG ELLLRVVCPG DKIGLVIGKA GMTIKNIRKE SGARVDVDDA KNDKEESIIT VSSTEATDDV KSAAVEAVLL LQAKINDETE DRMHLRLLVP
401: GNVIGCLIGK GGSIINDMRN KSKAIIHISK GTKPRKASSS DELVEVFGEV DKLRDALVQI VLRLREDVLK DSVGRQNSGK DGKLTVATTE PVSSSSFPMP
501: ALLPYSQQIT PLRHDQRGEV ERGSNVFPRS SLYHGYSPRE AVDDGFGVRS SYTSKPYGRR VPDMEMFIPS SGLSKVMGKH GTNLDNIRKI SGADIEILES
601: KSSRHDHVAH IFGTPEQRQS AENLIKAFIM ST

Best Arabidopsis Sequence Match ( AT5G46190.3 )
(BLAST)

001: MVERGKRTHN RFRDNNNDNN RNQRRRLSYE SEEKKIDNKD DLVVVYRILC PSGVMGSVIG KSGKVINLIR QETRARIKVV DPFPGCSERV ITIFCSVSEK
101: KDIVDIEYSE LDYSVPLCSA QAALLKVHDA IVASLATAAE NTKIDRDDFR ECRLLVPSSQ CSIVIGKSGS IIKNIRGRTR ANVKVVSKDV SDPSHTCAMD
201: FDNIVMISGE TESVKKALFA VSAIMYKVSP REQIPLDTTV QEVPASIIIP SDLSIYPQAG LYPSQDSIFQ HGANVSSFIG TLPQGYGENA ANPVPVFSAS
301: ALPVVHGFGG SSRSEKLAIK VICSSSKIGR VIGKGGLTIK GIRQASGSHI EVNDSRTNHD DDCVITVTAT ESPDDLKSMA VEAVLLLQEK INDEDEDKVK
401: MQLLVSSKVI GCIIGKSGSI ISEIRKRTKA DIHISKGNNT PKCADPNDEL VEISGEVSNV RDALIQIVLR LRDDVLRDRE TGSRNQPPAR SENNNFFSSS
501: SSNTGLALPQ SFMSSVPQVA SVDFNRRPET GSSMSMLPSS GGIYGYGSFP VGNTSYGSNS SYSSNLYGGL PQSTTMEVRI PANAVGKVMG RGGGNLDNIR
601: RISGAMIEIS DSKNSHGGRV ALISGTSEQK RTAENLFQAF IMST

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:TAIR;Acc:AT5G46190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.