CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049390_P001	Maize	nucleus	91.41	91.13
TraesCS3D01G519700.1	Wheat	nucleus	73.45	73.22
TraesCS3B01G580700.1	Wheat	nucleus	73.45	73.22
TraesCS3A01G512500.1	Wheat	nucleus	73.13	72.9
HORVU0Hr1G007380.3	Barley	mitochondrion, nucleus	72.97	72.63
TraesCS5D01G538200.3	Wheat	nucleus	72.18	72.06
TraesCS4A01G333900.1	Wheat	nucleus	72.34	71.99
HORVU5Hr1G121900.1	Barley	nucleus	72.18	71.84
TraesCS5B01G551800.1	Wheat	nucleus	71.7	71.47
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	53.26	53.77
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	55.64	53.76
KRH42565	Soybean	nucleus	53.42	53.76
PGSC0003DMT400076798	Potato	nucleus	52.94	53.71
KRH58669	Soybean	endoplasmic reticulum, nucleus	52.62	53.3
Solyc08g048500.2.1	Tomato	nucleus	51.99	53.0
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	56.92	51.81
CDX99470	Canola	nucleus	20.99	48.71
CDX99471	Canola	nucleus	15.9	46.51
CDY33460	Canola	nucleus	47.22	46.33
CDX77643	Canola	nucleus	46.74	46.01
Bra025032.1-P	Field mustard	nucleus	47.22	45.98
CDX78846	Canola	nucleus	41.65	45.64
Bra013302.1-P	Field mustard	nucleus	42.13	45.22
AT4G18375.2	Thale cress	nucleus	42.77	44.39
AT5G46190.2	Thale cress	cytosol	46.1	42.09
KXG39277	Sorghum	nucleus	25.28	29.34
KXG38256	Sorghum	nucleus	28.46	22.38
KXG35952	Sorghum	plastid	22.1	22.35
EES02175	Sorghum	nucleus, plastid	24.8	21.79
KXG20038	Sorghum	nucleus	21.94	20.66
OQU88922	Sorghum	nucleus, peroxisome, plastid	20.51	20.03
EER94472	Sorghum	cytosol	14.31	19.91
EES16283	Sorghum	cytosol	14.79	18.27
KXG29352	Sorghum	cytosol	12.56	15.31
OQU91315	Sorghum	plastid	10.65	13.79
EER94248	Sorghum	nucleus	12.88	13.78

Protein Annotations

Gene3D:3.30.1370.10	MapMan:35.1	EntrezGene:8085026	UniProt:C5YIF0	ProteinID:EES13495.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	ProteinID:OQU80049.1	EnsemblPlants:OQU80050	ProteinID:OQU80050	ProteinID:OQU80050.1	PFAM:PF00013
PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF137	SMART:SM00322	EnsemblPlantsGene:SORBI_3007G071200	SUPFAM:SSF54791
unigene:Sbi.21106	UniParc:UPI0001A8751E	RefSeq:XP_002444000.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:+:7882997..7889445

Molecular Weight (calculated)

68960.9 Da

IEP (calculated)

7.496

GRAVY (calculated)

-0.426

Length

629 amino acids

Sequence
(BLAST)

001: MRQHTGKRPR QHREYEREER KDQHKRPFPH AQESSNNDGL VLYRILCPDS LIGSVIGKNG NVINAIRQQT SAKVKVVDPY PGADKRVILV YCYVKHRDLD
101: AEVDDNEPVC AAQDALLRVH NAIVDTLHRN RRDSDKKNTE EANILVPASQ ASNVIGKSGA VIKHLRSTSR AFIKVSPKDP SDATHSCAMS FDNFVQITGG
201: AEAVKKALFG VSTIIYKHPS KENIPLETSI PEPTPSIIIP SELPVYPASN FYSAPDAAIP SVHPSLSILG STHHVPELAL PADDHGRLPI YPSILPVIPT
301: YSAPKCSGEL EFRVLCPSGK IGLVIGRGGA TIKNIRQESG ARIDVDDAKN DREESIITIT STEAIDDVKS AAVEAVLLLQ AKINDYEDDR MNLRLLVPNK
401: VIGCLIGRGG SIVNDMRKKT KANILISKGD KPRRASSSDE LVEVSGEADK LRDALVQIIL RLREDVLKES VESQNSDRDG KLTVATSDSL YGSSLSLPAL
501: LPHNPQIAPL SYDRRGESER ALEVFPRTSS YGYSSMQVTD DGYGGLPSYT SKAYEEHLPR DEMTIPASGL SKVMGKRGTN LDNIRKISGA HIEIIESKSS
601: RHDHIAYISG TSEQRQSAEN LIKAFIMST

Best Arabidopsis Sequence Match ( AT5G46190.3 )
(BLAST)

001: MVERGKRTHN RFRDNNNDNN RNQRRRLSYE SEEKKIDNKD DLVVVYRILC PSGVMGSVIG KSGKVINLIR QETRARIKVV DPFPGCSERV ITIFCSVSEK
101: KDIVDIEYSE LDYSVPLCSA QAALLKVHDA IVASLATAAE NTKIDRDDFR ECRLLVPSSQ CSIVIGKSGS IIKNIRGRTR ANVKVVSKDV SDPSHTCAMD
201: FDNIVMISGE TESVKKALFA VSAIMYKVSP REQIPLDTTV QEVPASIIIP SDLSIYPQAG LYPSQDSIFQ HGANVSSFIG TLPQGYGENA ANPVPVFSAS
301: ALPVVHGFGG SSRSEKLAIK VICSSSKIGR VIGKGGLTIK GIRQASGSHI EVNDSRTNHD DDCVITVTAT ESPDDLKSMA VEAVLLLQEK INDEDEDKVK
401: MQLLVSSKVI GCIIGKSGSI ISEIRKRTKA DIHISKGNNT PKCADPNDEL VEISGEVSNV RDALIQIVLR LRDDVLRDRE TGSRNQPPAR SENNNFFSSS
501: SSNTGLALPQ SFMSSVPQVA SVDFNRRPET GSSMSMLPSS GGIYGYGSFP VGNTSYGSNS SYSSNLYGGL PQSTTMEVRI PANAVGKVMG RGGGNLDNIR
601: RISGAMIEIS DSKNSHGGRV ALISGTSEQK RTAENLFQAF IMST

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:TAIR;Acc:AT5G46190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.