CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029328_P002	Maize	nucleus	94.28	94.45
Os03t0376800-02	Rice	nucleus	83.76	83.76
TraesCS4A01G150800.1	Wheat	nucleus	79.52	79.96
TraesCS4D01G160700.2	Wheat	nucleus	77.31	74.42
HORVU4Hr1G049680.1	Barley	nucleus	79.7	74.23
TraesCS4B01G166500.2	Wheat	nucleus	76.75	73.89
GSMUA_Achr7P11520_001	Banana	mitochondrion, nucleus	68.08	69.62
GSMUA_Achr6P10750_001	Banana	nucleus	64.21	65.41
VIT_01s0026g02650.t01	Wine grape	nucleus	63.84	60.49
PGSC0003DMT400047374	Potato	nucleus	55.17	56.1
Solyc05g007810.2.1	Tomato	nucleus	54.98	56.02
Bra019674.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	40.59	53.79
AT2G03110.1	Thale cress	cytosol	15.13	53.59
CDX81615	Canola	cytosol	45.02	53.16
CDY33769	Canola	nucleus	47.23	52.78
Bra026852.1-P	Field mustard	nucleus	47.23	52.78
CDY39336	Canola	mitochondrion	45.39	52.01
AT1G14170.3	Thale cress	cytosol, mitochondrion, nucleus, plastid	45.94	51.98
CDY49107	Canola	nucleus	45.39	51.79
CDY03018	Canola	nucleus	43.54	50.43
CDY45180	Canola	cytosol	37.08	47.52
Bra024789.1-P	Field mustard	cytosol	32.66	47.07
CDY51849	Canola	cytosol	8.86	45.28
OQU80050	Sorghum	nucleus	29.34	25.28
KXG38256	Sorghum	nucleus	35.06	23.75
EER94472	Sorghum	cytosol	19.56	23.45
KXG35952	Sorghum	plastid	24.91	21.7
EES02175	Sorghum	nucleus, plastid	28.04	21.23
EES16283	Sorghum	cytosol	19.19	20.43
OQU88922	Sorghum	nucleus, peroxisome, plastid	22.88	19.25
EER94248	Sorghum	nucleus	19.37	17.86
KXG20038	Sorghum	nucleus	21.96	17.81
KXG29352	Sorghum	cytosol	16.61	17.44
OQU91315	Sorghum	plastid	15.13	16.87

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	UniProt:A0A1B6QMZ8	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
EnsemblPlants:KXG39277	ProteinID:KXG39277	ProteinID:KXG39277.1	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288
PANTHER:PTHR10288:SF151	SMART:SM00322	EnsemblPlantsGene:SORBI_3001G356600	SUPFAM:SSF54791	UniParc:UPI00081AC67F	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:64587598..64592903

Molecular Weight (calculated)

57932.8 Da

IEP (calculated)

7.257

GRAVY (calculated)

-0.445

Length

542 amino acids

Sequence
(BLAST)

001: MAGHRNSHGK RHSDYTENGG GKRRNPGDDT YAPGPDDTVY RYLCASRKIG SIIGRGGEIA KQLRTETQAK IRIGESVPGC DERVITIFSS SRKTNTIDDA
101: EDKVCPAQDA LFRVHERLAT DESIGNEDSE EISPQVTVRL LVPSDQIGCI LGKGGHIIQG IRSETGAQIR VLSNDHIPAC AISGDELLQI SGDTVVVRKA
201: LHQVSSRLHD NPSKSQHHLA SSLTQPYPGS TTHLGGSSTA PVVGITPVIP PYGGYKGDAA GDWSSLYQPR RDESSAKEFS LRLLCAAANV GGVIGKGGGI
301: IKQIRQESGA LIKVASSNSD PDDDCIITVS AKEFFEDPVS PTIDAAVRLQ PRCSEKSDSE SAEQSYTTRL LVSTSRIGCL IGKGGSIITE IRRTSRANIR
401: ILSKENVPKV AAEDEEMVQI SGGLDVARHA LVQIATRLKA NFFEREGSLS AFPSVIPYHP LPSGASDEPK YLSRDTKPVG HYLYSSAFRT SDDMIPSDSY
501: ASYGGSQALG GGYGAYSGYS ARSSGSGLSG HSSLHYGKRH GY

Best Arabidopsis Sequence Match ( AT5G15270.3 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.