Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G166500.2 | Wheat | nucleus | 97.87 | 97.87 |
| TraesCS4A01G150800.1 | Wheat | nucleus | 89.7 | 93.69 |
| HORVU4Hr1G049680.1 | Barley | nucleus | 87.74 | 84.88 |
| Os03t0376800-02 | Rice | nucleus | 78.15 | 81.18 |
| KXG39277 | Sorghum | nucleus | 74.42 | 77.31 |
| Zm00001d029328_P002 | Maize | nucleus | 73.89 | 76.89 |
| GSMUA_Achr7P11520_001 | Banana | mitochondrion, nucleus | 63.77 | 67.74 |
| GSMUA_Achr6P10750_001 | Banana | nucleus | 59.5 | 62.97 |
| VIT_01s0026g02650.t01 | Wine grape | nucleus | 58.44 | 57.52 |
| AT2G03110.1 | Thale cress | cytosol | 14.92 | 54.9 |
| PGSC0003DMT400047374 | Potato | nucleus | 51.69 | 54.6 |
| Solyc05g007810.2.1 | Tomato | nucleus | 50.98 | 53.95 |
| Bra019674.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 37.48 | 51.59 |
| AT1G14170.3 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 42.81 | 50.31 |
| CDX81615 | Canola | cytosol | 40.67 | 49.89 |
| CDY33769 | Canola | nucleus | 42.81 | 49.69 |
| Bra026852.1-P | Field mustard | nucleus | 42.81 | 49.69 |
| CDY49107 | Canola | nucleus | 41.56 | 49.26 |
| CDY39336 | Canola | mitochondrion | 41.39 | 49.26 |
| CDY03018 | Canola | nucleus | 40.32 | 48.5 |
| CDY45180 | Canola | cytosol | 34.28 | 45.63 |
| Bra024789.1-P | Field mustard | cytosol | 30.2 | 45.21 |
| CDY51849 | Canola | cytosol | 7.64 | 40.57 |
| TraesCS3D01G519700.1 | Wheat | nucleus | 27.71 | 24.72 |
| TraesCS5D01G538200.3 | Wheat | nucleus | 27.18 | 24.29 |
| TraesCS1D01G161200.3 | Wheat | nucleus | 33.57 | 22.72 |
| TraesCS1D01G218700.1 | Wheat | cytosol | 17.23 | 21.56 |
| TraesCS5D01G284200.4 | Wheat | plastid | 23.45 | 21.05 |
| TraesCS3D01G166400.1 | Wheat | cytosol, mitochondrion, nucleus | 26.29 | 20.99 |
| TraesCS4D01G068400.1 | Wheat | nucleus | 17.05 | 18.68 |
| TraesCS5D01G071000.1 | Wheat | nucleus | 17.05 | 18.5 |
| TraesCS7D01G341400.1 | Wheat | nucleus | 21.31 | 17.83 |
| TraesCS1D01G134700.1 | Wheat | cytosol | 17.94 | 16.83 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G160700.2 | EnsemblPlantsGene:TraesCS4D01G160700 | Gene3D:3.30.1370.10 | Gene3D:3.30.310.210 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf |
| PANTHER:PTHR10288 | PANTHER:PTHR10288:SF151 | PFAM:PF00013 | PFscan:PS50084 | SEG:seg | SMART:SM00322 |
| SUPFAM:SSF54791 | TIGR:cd02396 | TMHMM:TMhelix | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr4D:-:238636980..238641046
Molecular Weight (calculated)
60623.1 Da
IEP (calculated)
6.698
GRAVY (calculated)
-0.247
Length
563 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGPGHRNSH GKRQSDYAEN GGVKRRNPGD DTYAPGPDDT VYRYLCTSRK IGSIIGRGGE IAKQLRSDTQ AKIRIGESVP NCDDRVITIF SSSRETNTIE
101: DTEDKVCAAQ DALFRVHEKL ATDDGPVNEE NEEGLGQVTV RLLVPSDQIG CIIGKGGHII QGIRSDTGSQ IRVLSNEHLP ACATSGDELL LIIGDPIVVR
201: KALLQVSSRL HGNPSRSQHL LASGLTQPFP AGSRLGSSST APVVGITPMV GPYGRYKGDM VGDWPSIYQP RREVSSAKEF TLRLLCAAAN VGGVIGKGGG
301: IIKQIRQESG AFIKVDSSSA EGDCIITVSA KEFFEDPVSP TIDATVRLQP RCSEKIDAES GEPSYTTRLL VSTSRIGCLI GKGGSIITEI RRTSRANIRI
401: ISKEDVPKVA SDDEEMVQIS GDLDVARHAL VQITTRLKAN FFEREGALSG FPPVIPYHPL PASVSDEPKY LSRDNKSAGH DYPYSSGYRA SDDVLPVDRY
501: ANYGSSQAAM VLTVVVLAAA GYLALPIFHL ENAMAIKMQV VESNSSLPMN LSVSHLHPCP ILY
101: DTEDKVCAAQ DALFRVHEKL ATDDGPVNEE NEEGLGQVTV RLLVPSDQIG CIIGKGGHII QGIRSDTGSQ IRVLSNEHLP ACATSGDELL LIIGDPIVVR
201: KALLQVSSRL HGNPSRSQHL LASGLTQPFP AGSRLGSSST APVVGITPMV GPYGRYKGDM VGDWPSIYQP RREVSSAKEF TLRLLCAAAN VGGVIGKGGG
301: IIKQIRQESG AFIKVDSSSA EGDCIITVSA KEFFEDPVSP TIDATVRLQP RCSEKIDAES GEPSYTTRLL VSTSRIGCLI GKGGSIITEI RRTSRANIRI
401: ISKEDVPKVA SDDEEMVQIS GDLDVARHAL VQITTRLKAN FFEREGALSG FPPVIPYHPL PASVSDEPKY LSRDNKSAGH DYPYSSGYRA SDDVLPVDRY
501: ANYGSSQAAM VLTVVVLAAA GYLALPIFHL ENAMAIKMQV VESNSSLPMN LSVSHLHPCP ILY
001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG
Arabidopsis Description
RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.