Factsheet for TraesCS5D01G538200.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G551800.1	Wheat	nucleus	97.46	97.31
TraesCS4A01G333900.1	Wheat	nucleus	97.46	97.15
HORVU5Hr1G121900.1	Barley	nucleus	94.13	93.83
TraesCS3D01G519700.1	Wheat	nucleus	92.7	92.55
OQU80050	Sorghum	nucleus	72.06	72.18
Zm00001d024270_P001	Maize	nucleus	72.06	71.84
Zm00001d049390_P001	Maize	nucleus	69.37	69.26
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	54.29	52.53
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	51.59	52.17
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	56.67	51.66
Solyc08g048500.2.1	Tomato	nucleus	49.68	50.73
KRH42565	Soybean	nucleus	50.16	50.56
PGSC0003DMT400076798	Potato	nucleus	49.52	50.32
KRH58669	Soybean	endoplasmic reticulum, nucleus	49.21	49.92
CDX99470	Canola	nucleus	19.84	46.13
CDX77643	Canola	nucleus	45.87	45.23
CDY33460	Canola	nucleus	45.71	44.93
Bra025032.1-P	Field mustard	nucleus	46.03	44.89
AT4G18375.2	Thale cress	nucleus	42.7	44.39
CDX78846	Canola	nucleus	39.52	43.38
CDX99471	Canola	nucleus	14.76	43.26
Bra013302.1-P	Field mustard	nucleus	39.68	42.66
AT5G46190.2	Thale cress	cytosol	45.4	41.51
TraesCS4D01G160700.2	Wheat	nucleus	24.29	27.18
TraesCS5D01G284200.4	Wheat	plastid	22.7	22.81
TraesCS3D01G166400.1	Wheat	cytosol, mitochondrion, nucleus	24.76	22.13
TraesCS1D01G218700.1	Wheat	cytosol	14.92	20.89
TraesCS7D01G341400.1	Wheat	nucleus	22.06	20.65
TraesCS1D01G161200.3	Wheat	nucleus	26.35	19.95
TraesCS5D01G071000.1	Wheat	nucleus	15.87	19.27
TraesCS4D01G068400.1	Wheat	nucleus	14.76	18.09
TraesCS1D01G134700.1	Wheat	cytosol	15.08	15.83

Protein Annotations

EnsemblPlants:TraesCS5D01G538200.3	EnsemblPlantsGene:TraesCS5D01G538200	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
PANTHER:PTHR10288	PANTHER:PTHR10288:SF137	PFAM:PF00013	PFscan:PS50084	SEG:seg	SMART:SM00322
SUPFAM:SSF54791	TIGR:cd00105	TIGR:cd02396	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr5D:+:550438655..550441873

Molecular Weight (calculated)

68566.9 Da

IEP (calculated)

8.210

GRAVY (calculated)

-0.334

Length

630 amino acids

Sequence
(BLAST)

001: MKPSGKRTSQ HRDHDREDRD QKRRPAHTQE TSGTDELVVY RILCPDKVIG SVIGKGGKVI NSIRQQTNAK VKIVDPYPGA DKRVVLVYCY VKHRDVMISD
101: IDDDDDREPV CAAQNALLMV HDAIVDALAI TSDSDDKEAN ILVPASQAAS VIGKSGAVIK RLRSVSKSFI KVKPKDPSDV THSCAMSFDN FVQITGDTRA
201: VKKALFAVST IIYKCPSKEN IPLETSIDEL PPTIILPSEL PVYPASSLYS VSDASVSSGH PSLSILGARS RGSHVPEFTV PTDAHGGLPI YQSMVPAIPT
301: YNTPKCSGEL LVRVVCPGDR IGLVIGKGGM TIKNIRKESG ASVDVDDAKN DKEESIITIS STEATDDVKS AAVEAVLLLQ AKINDETEDR IHLRLLVPGN
401: VIGCLIGKGG SIINDMRNKS KAIIHISKGT KPRKASSSDE LVEVFGEVDK LRDALVQIVL RLREEVLKDS VGRQNSGKDG KLTVATTEPV YSSSFPMPAL
501: LPYSQQITPL RHDQRGEAER GSNVFPRSNL YHGYSPRQAV DDGFGVRSSY TSKPYGRRVP DMEMFIPSSG LSKVMGKHGT NLDNIRKISG ADIEIIESKS
601: SRHEHVANIF GTPEQRQSAE NLIKAFIMST

Best Arabidopsis Sequence Match ( AT4G18375.2 )
(BLAST)

001: MVERKKRKQI QRNNSESNRN QKRRISHDKI NRDELVVYRI LCPIDVVGGV IGKSGKVINA IRHNTKAKIK VFDQLHGCSQ RVITIYCSVK EKQEEIGFTK
101: SENEPLCCAQ DALLKVYDAI VASDEENNTK TNVDRDDNKE CRLLVPFSQS SSLIGKAGEN IKRIRRRTRA SVKVVSKDVS DPSHVCAMEY DNVVVISGEP
201: ESVKQALFAV SAIMYKINPR ENIPLDSTSQ DVPAASVIVP SDLSNSVYPQ TGFYSNQDHI LQQGAGVPSY FNALSVSDFQ GYAETAANPV PVFASSLPVT
301: HGFGGSSRSE ELVFKVLCPL CNIMRVIGKG GSTIKRIREA SGSCIEVNDS RTKCGDDECV IIVTATESPD DMKSMAVEAV LLLQEYINDE DAENVKMQLL
401: VSSKVIGCVI GKSGSVINEI RKRTNANICI SKGKKDDLVE VSGEVSSVRD ALIQIVLRLR EDVLGDKDSV ATRKPPARTD NCSFLSGSSN AGYTLPSFMS
501: SMASTSGFHG YGSFPAGDNV LGSTGPYSYG RLPSSSALEI LIPAHAMSKV MGKGGGNLEN IRRISGAMIE ISASKTSHGD HIALLSGTLE QMRCAENLVQ
601: AFVMST

Arabidopsis Description

KH domain-containing protein At4g18375 [Source:UniProtKB/Swiss-Prot;Acc:P58223]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.