Factsheet for Bra025032.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33460	Canola	nucleus	98.3	99.06
AT5G46190.2	Thale cress	cytosol	81.11	76.05
Bra013302.1-P	Field mustard	nucleus	58.51	64.51
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	58.2	60.35
KRH42565	Soybean	nucleus	57.43	59.36
KRH58669	Soybean	endoplasmic reticulum, nucleus	56.19	58.45
PGSC0003DMT400076798	Potato	nucleus	54.49	56.77
Solyc08g048500.2.1	Tomato	nucleus	53.87	56.4
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	51.24	50.84
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	52.01	48.63
OQU80050	Sorghum	nucleus	45.98	47.22
TraesCS3A01G512500.1	Wheat	nucleus	45.82	46.91
TraesCS3B01G580700.1	Wheat	nucleus	45.82	46.91
TraesCS3D01G519700.1	Wheat	nucleus	45.82	46.91
HORVU5Hr1G121900.1	Barley	nucleus	45.51	46.52
HORVU0Hr1G007380.3	Barley	mitochondrion, nucleus	45.36	46.36
TraesCS4A01G333900.1	Wheat	nucleus	45.05	46.04
Zm00001d024270_P001	Maize	nucleus	45.05	46.04
TraesCS5D01G538200.3	Wheat	nucleus	44.89	46.03
TraesCS5B01G551800.1	Wheat	nucleus	44.89	45.96
Zm00001d049390_P001	Maize	nucleus	44.12	45.17
Bra019674.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	20.12	31.78
Bra026852.1-P	Field mustard	nucleus	22.76	30.31
Bra008709.1-P	Field mustard	nucleus	23.99	29.98
Bra024789.1-P	Field mustard	cytosol	15.48	26.6
Bra006294.1-P	Field mustard	nucleus	24.15	26.0
Bra001111.1-P	Field mustard	cytosol	15.33	25.38
Bra003085.1-P	Field mustard	nucleus	23.07	23.32
Bra022624.1-P	Field mustard	nucleus	23.84	23.3
Bra014290.1-P	Field mustard	plastid	19.5	21.69
Bra030226.1-P	Field mustard	plastid	20.43	21.29
Bra038508.1-P	Field mustard	cytosol, plastid	20.59	20.81
Bra024292.1-P	Field mustard	nucleus	27.09	20.42
Bra019133.1-P	Field mustard	cytosol	12.07	19.6
Bra013940.1-P	Field mustard	cytosol	12.23	18.59

Protein Annotations

Gene3D:3.30.1370.10	MapMan:35.1	EnsemblPlantsGene:Bra025032	EnsemblPlants:Bra025032.1	EnsemblPlants:Bra025032.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	UniProt:M4E8C6	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288
PANTHER:PTHR10288:SF137	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI000253FBDE	SEG:seg	:

Description

AT5G46190 (E=2e-232) | KH domain-containing protein

Coordinates

chrA06:+:24811145..24813911

Molecular Weight (calculated)

69771.6 Da

IEP (calculated)

8.332

GRAVY (calculated)

-0.357

Length

646 amino acids

Sequence
(BLAST)

001: MVERGNKRTH NRTDNNNNNR NQKRRLSHQT EEKLNNNNKD DLVVYRILCP SVVIGSVIGK SGKVINTIRQ ETRARIKVVD PFPGCTERVL TIYCTVNDKK
101: DIVDIENSDH QITPLCSAQD ALLKLHDAIV ASLATAAENS KIGRDDIREC RLLVPTSQCS NVIGKAGSTV KKVRSRTGAN VKIVSKDVSD PSHACAMDFD
201: NIVSISGGAE SVKKALFAVS AIMYKFSPKE QIPLDATVQE APASIIIPSD LSIYPQTGLY QSQDPIFQHG ANVPSFIGTL PQGYGETATP VFSSSALPVV
301: HHGTFGGVSS SSRQEELVVK VLCSSSNIGR VIGKGGSTIK GIRQASGSHI EVNDSRARAN HDEDCVIIVT SKESPDDLKS MAVEAVLLLQ EKINDEDEEK
401: PKMQLLVPSK VIGCIIGKSG SIISEIRKKT NANIYISKEN NKCADLNDEL VEISGEASNV RDALIQIVLR LRDDVLRDRE TSGFRNQQPP ARSEKSSSYF
501: SSSERSNAAA ALALTPSFMS SVPQVASVDY DRRPETGMSG GLYGYGSFPV GDNSYGSNSS YSSSRYGGLP QSSTTIMEIR IPSNAVGKVM GRGGGNLDNI
601: RRISGAMIEI SDSKSSSHGG RIALISGTPE QKRTAENLFQ AFIMST

Best Arabidopsis Sequence Match ( AT5G46190.3 )
(BLAST)

001: MVERGKRTHN RFRDNNNDNN RNQRRRLSYE SEEKKIDNKD DLVVVYRILC PSGVMGSVIG KSGKVINLIR QETRARIKVV DPFPGCSERV ITIFCSVSEK
101: KDIVDIEYSE LDYSVPLCSA QAALLKVHDA IVASLATAAE NTKIDRDDFR ECRLLVPSSQ CSIVIGKSGS IIKNIRGRTR ANVKVVSKDV SDPSHTCAMD
201: FDNIVMISGE TESVKKALFA VSAIMYKVSP REQIPLDTTV QEVPASIIIP SDLSIYPQAG LYPSQDSIFQ HGANVSSFIG TLPQGYGENA ANPVPVFSAS
301: ALPVVHGFGG SSRSEKLAIK VICSSSKIGR VIGKGGLTIK GIRQASGSHI EVNDSRTNHD DDCVITVTAT ESPDDLKSMA VEAVLLLQEK INDEDEDKVK
401: MQLLVSSKVI GCIIGKSGSI ISEIRKRTKA DIHISKGNNT PKCADPNDEL VEISGEVSNV RDALIQIVLR LRDDVLRDRE TGSRNQPPAR SENNNFFSSS
501: SSNTGLALPQ SFMSSVPQVA SVDFNRRPET GSSMSMLPSS GGIYGYGSFP VGNTSYGSNS SYSSNLYGGL PQSTTMEVRI PANAVGKVMG RGGGNLDNIR
601: RISGAMIEIS DSKNSHGGRV ALISGTSEQK RTAENLFQAF IMST

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:TAIR;Acc:AT5G46190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.