Factsheet for HORVU0Hr1G007380.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G519700.1	Wheat	nucleus	94.15	94.29
TraesCS3B01G580700.1	Wheat	nucleus	93.99	94.14
TraesCS3A01G512500.1	Wheat	nucleus	93.51	93.66
HORVU5Hr1G121900.1	Barley	nucleus	89.87	89.87
OQU80050	Sorghum	nucleus	72.63	72.97
Zm00001d024270_P001	Maize	nucleus	71.68	71.68
Zm00001d049390_P001	Maize	nucleus	70.25	70.36
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	55.06	53.46
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	57.28	52.39
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	51.58	52.33
Solyc08g048500.2.1	Tomato	nucleus	50.63	51.86
PGSC0003DMT400076798	Potato	nucleus	50.79	51.77
KRH42565	Soybean	nucleus	50.0	50.56
KRH58669	Soybean	endoplasmic reticulum, nucleus	48.89	49.76
CDX99470	Canola	nucleus	20.41	47.6
CDX77643	Canola	nucleus	46.68	46.17
CDY33460	Canola	nucleus	46.04	45.4
Bra025032.1-P	Field mustard	nucleus	46.36	45.36
AT4G18375.2	Thale cress	nucleus	43.04	44.88
CDX78846	Canola	nucleus	40.03	44.08
Bra013302.1-P	Field mustard	nucleus	40.35	43.52
CDX99471	Canola	nucleus	14.72	43.26
AT5G46190.2	Thale cress	cytosol	45.41	41.65
HORVU4Hr1G049680.1	Barley	nucleus	24.53	26.63
HORVU5Hr1G075110.3	Barley	mitochondrion	23.26	22.83
HORVU7Hr1G082230.1	Barley	nucleus	21.84	22.04
HORVU1Hr1G043680.7	Barley	nucleus	27.69	21.47
HORVU1Hr1G036300.1	Barley	cytosol	6.17	21.43
HORVU3Hr1G057270.16	Barley	plastid	23.42	19.07
HORVU1Hr1G055480.1	Barley	plastid	14.24	17.93
HORVU4Hr1G011610.11	Barley	cytoskeleton, cytosol, nucleus	13.92	16.24
HORVU6Hr1G014510.1	Barley	cytosol, mitochondrion, nucleus, plastid	11.39	14.55
HORVU1Hr1G036280.1	Barley	cytosol	7.91	12.2

Protein Annotations

EnsemblPlants:HORVU0Hr1G007380.3	EnsemblPlantsGene:HORVU0Hr1G007380	Gene3D:3.30.1370.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288
PANTHER:PTHR10288:SF137	PFAM:PF00013	PFscan:PS50084	SEG:seg	SMART:SM00322	SUPFAM:SSF54791
UniParc:UPI000295CBE6	UniProt:M0XJ99	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchrUn:+:42093492..42097210

Molecular Weight (calculated)

68911.3 Da

IEP (calculated)

7.996

GRAVY (calculated)

-0.345

Length

632 amino acids

Sequence
(BLAST)

001: MRHAGKRTTQ HRDHDTQDRD QKRRPAHTQE SSGMDELVVY RILCPDKAIG SVIGKGGKVI NSIRQQTNAK VKVVDPYPGA DKRVILVYCY VKHRDLKHSD
101: IDAADDDREP VCAAQNALLK VHDAIVGALA VNCDSDDEEA NILVPASQAA SIIGKSGSVI KRLRSVSKSF IKVKPKDPSD VAHSCAMSFD NFVQITGDAR
201: AVKKALFAVS TIIYKCPSKE NIPLETSIDE LPPTIILPSE LSVYPASNLY SVSDASMPSG HPSLSILGAP SHGSHVPEFT VPTDAHGGLP IYHSMVSAIP
301: TYNAPKCSGE LLLRVACPAD KIGFVIGKGG VTIRSIRKES GARVDVDDAK NDKEESIITI TSTEATDDVK SAAVEAVLLL QAKITDENED RMHLRLLVPA
401: NVIGCLIGKG GSIINDMRMK SKAIIYISKG TKPQRASSND ELVEVSGEVD KLRDALVQIV LRLREDVLKD SVGRQNSGKD GKLTVATTEP MYSSNFPMPA
501: LLPYSQQITP LRYDQRDEAE RGSNVFPRSS LYHGYSPRQQ AVDDGFGLRS SYTSKPYGRR VPDMEMFIPS SGLSKVMGKH GTNLDNIRKI SGADIEIIES
601: KSSRHEHVAY IYGTPEQRQS AENLIKAFIM ST

Best Arabidopsis Sequence Match ( AT5G46190.3 )
(BLAST)

001: MVERGKRTHN RFRDNNNDNN RNQRRRLSYE SEEKKIDNKD DLVVVYRILC PSGVMGSVIG KSGKVINLIR QETRARIKVV DPFPGCSERV ITIFCSVSEK
101: KDIVDIEYSE LDYSVPLCSA QAALLKVHDA IVASLATAAE NTKIDRDDFR ECRLLVPSSQ CSIVIGKSGS IIKNIRGRTR ANVKVVSKDV SDPSHTCAMD
201: FDNIVMISGE TESVKKALFA VSAIMYKVSP REQIPLDTTV QEVPASIIIP SDLSIYPQAG LYPSQDSIFQ HGANVSSFIG TLPQGYGENA ANPVPVFSAS
301: ALPVVHGFGG SSRSEKLAIK VICSSSKIGR VIGKGGLTIK GIRQASGSHI EVNDSRTNHD DDCVITVTAT ESPDDLKSMA VEAVLLLQEK INDEDEDKVK
401: MQLLVSSKVI GCIIGKSGSI ISEIRKRTKA DIHISKGNNT PKCADPNDEL VEISGEVSNV RDALIQIVLR LRDDVLRDRE TGSRNQPPAR SENNNFFSSS
501: SSNTGLALPQ SFMSSVPQVA SVDFNRRPET GSSMSMLPSS GGIYGYGSFP VGNTSYGSNS SYSSNLYGGL PQSTTMEVRI PANAVGKVMG RGGGNLDNIR
601: RISGAMIEIS DSKNSHGGRV ALISGTSEQK RTAENLFQAF IMST

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:TAIR;Acc:AT5G46190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.