Factsheet for TraesCS3B01G580700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G519700.1	Wheat	nucleus	98.73	98.73
TraesCS3A01G512500.1	Wheat	nucleus	97.62	97.62
HORVU0Hr1G007380.3	Barley	mitochondrion, nucleus	94.14	93.99
TraesCS5B01G551800.1	Wheat	nucleus	93.03	93.03
OQU80050	Sorghum	nucleus	73.22	73.45
Zm00001d024270_P001	Maize	nucleus	72.58	72.47
Zm00001d049390_P001	Maize	nucleus	70.05	70.05
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	55.63	53.92
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	58.16	53.11
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	52.3	52.97
Solyc08g048500.2.1	Tomato	nucleus	51.03	52.19
PGSC0003DMT400076798	Potato	nucleus	51.03	51.94
KRH42565	Soybean	nucleus	51.19	51.68
KRH58669	Soybean	endoplasmic reticulum, nucleus	50.08	50.89
CDX99470	Canola	nucleus	20.29	47.23
CDX77643	Canola	nucleus	46.91	46.32
CDY33460	Canola	nucleus	46.59	45.87
Bra025032.1-P	Field mustard	nucleus	46.91	45.82
AT4G18375.2	Thale cress	nucleus	43.42	45.21
CDX99471	Canola	nucleus	15.21	44.65
CDX78846	Canola	nucleus	40.25	44.25
Bra013302.1-P	Field mustard	nucleus	40.57	43.69
AT5G46190.2	Thale cress	cytosol	45.96	42.09
TraesCS4B01G166500.2	Wheat	nucleus	24.88	27.89
TraesCS5B01G276400.1	Wheat	plastid	22.66	22.88
TraesCS3B01G189700.1	Wheat	nucleus	24.88	22.18
TraesCS1B01G181000.3	Wheat	nucleus	27.42	20.57
TraesCS1B01G229900.1	Wheat	cytosol	14.42	20.27
TraesCS7B01G245400.2	Wheat	nucleus	21.87	19.44
TraesCS5B01G066800.1	Wheat	nucleus	15.06	18.27
TraesCS4B01G069700.1	Wheat	nucleus	14.58	18.0
TraesCS6B01G113100.1	Wheat	cytosol	11.57	15.63
TraesCS1B01G155000.1	Wheat	cytosol, mitochondrion, nucleus	13.79	14.52

Protein Annotations

EnsemblPlants:TraesCS3B01G580700.1	EnsemblPlantsGene:TraesCS3B01G580700	Gene3D:3.30.1370.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288
PANTHER:PTHR10288:SF137	PFAM:PF00013	PFscan:PS50084	SEG:seg	SMART:SM00322	SUPFAM:SSF54791
TIGR:cd00105	TIGR:cd02396	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3B:-:809602487..809606420

Molecular Weight (calculated)

68781.9 Da

IEP (calculated)

7.480

GRAVY (calculated)

-0.344

Length

631 amino acids

Sequence
(BLAST)

001: MSHAGKRTSQ HRDHDREDRD QKRRPAHTQE TSSTDELVVY RILCPDKVIG SVIGKGGKVI NSIRQQTNAK VKVVDPYPGA DKRVILVYCY VKHRDLKHSD
101: IDADDDDREP VCAAQNALLK VHDAIVDALA VNSDSDDEEA NILVPASQAA SVIGKSGSVI KRLRSVSKSF IKVKPKDPSD VTHSCAMSFD NFVQITGDAR
201: AVKKALFAVS TIIYKCPSKE NISLETSIDE LPPTIILPSE LPVYPASSLY SVSDASMTSG HPSLSILGAP SHGSHVPEFT VPTDAHGGLP IYHSMVPAIP
301: TYNTPKCSGE LLLRVACPAD KIGLVIGKGG VTIKSIRKES GARVDVDDAK NDKEESIITI ASTEATDDVK SAAVEAVLLL QAKINDETED RMHLRLLVPA
401: NVIGCLIGKG GSIINDMRTK SKAIIYISKG TKPRRASSSD ELVEVSGEVD RLRDALVQIV LRLREDVLKD SVGRQNSGKD EKLTVATTEP VYSSSFPMPA
501: LLPYSQQITP LRYDQRSEVE RGSDVFPRSS LYHGYSPRQA VDDGFGVRSS YTSKPYGRRV PDMEMFIPSS GLSKVMGKHG TNLDNIRKIS GADIEIIESK
601: SSRHEHVAHI FGTPEQRQSA ENLIKAFIMS T

Best Arabidopsis Sequence Match ( AT5G46190.3 )
(BLAST)

001: MVERGKRTHN RFRDNNNDNN RNQRRRLSYE SEEKKIDNKD DLVVVYRILC PSGVMGSVIG KSGKVINLIR QETRARIKVV DPFPGCSERV ITIFCSVSEK
101: KDIVDIEYSE LDYSVPLCSA QAALLKVHDA IVASLATAAE NTKIDRDDFR ECRLLVPSSQ CSIVIGKSGS IIKNIRGRTR ANVKVVSKDV SDPSHTCAMD
201: FDNIVMISGE TESVKKALFA VSAIMYKVSP REQIPLDTTV QEVPASIIIP SDLSIYPQAG LYPSQDSIFQ HGANVSSFIG TLPQGYGENA ANPVPVFSAS
301: ALPVVHGFGG SSRSEKLAIK VICSSSKIGR VIGKGGLTIK GIRQASGSHI EVNDSRTNHD DDCVITVTAT ESPDDLKSMA VEAVLLLQEK INDEDEDKVK
401: MQLLVSSKVI GCIIGKSGSI ISEIRKRTKA DIHISKGNNT PKCADPNDEL VEISGEVSNV RDALIQIVLR LRDDVLRDRE TGSRNQPPAR SENNNFFSSS
501: SSNTGLALPQ SFMSSVPQVA SVDFNRRPET GSSMSMLPSS GGIYGYGSFP VGNTSYGSNS SYSSNLYGGL PQSTTMEVRI PANAVGKVMG RGGGNLDNIR
601: RISGAMIEIS DSKNSHGGRV ALISGTSEQK RTAENLFQAF IMST

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:TAIR;Acc:AT5G46190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.