Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025032.1-P | Field mustard | nucleus | 99.06 | 98.3 |
| CDX77643 | Canola | nucleus | 95.63 | 95.93 |
| AT5G46190.2 | Thale cress | cytosol | 81.44 | 75.76 |
| CDX99470 | Canola | nucleus | 29.02 | 68.63 |
| CDX78846 | Canola | nucleus | 58.35 | 65.16 |
| VIT_10s0003g03860.t01 | Wine grape | cytosol, nucleus, plastid | 58.35 | 60.03 |
| CDX99471 | Canola | nucleus | 20.12 | 60.0 |
| KRH42565 | Soybean | nucleus | 57.57 | 59.04 |
| KRH58669 | Soybean | endoplasmic reticulum, nucleus | 56.32 | 58.13 |
| PGSC0003DMT400076798 | Potato | nucleus | 54.76 | 56.61 |
| Solyc08g048500.2.1 | Tomato | nucleus | 54.13 | 56.24 |
| GSMUA_Achr6P03670_001 | Banana | cytosol, nucleus, plastid | 51.01 | 50.23 |
| GSMUA_Achr9P18150_001 | Banana | endoplasmic reticulum, golgi | 52.11 | 48.34 |
| OQU80050 | Sorghum | nucleus | 46.33 | 47.22 |
| TraesCS3D01G519700.1 | Wheat | nucleus | 46.02 | 46.75 |
| TraesCS3A01G512500.1 | Wheat | nucleus | 45.87 | 46.59 |
| TraesCS3B01G580700.1 | Wheat | nucleus | 45.87 | 46.59 |
| HORVU5Hr1G121900.1 | Barley | nucleus | 45.55 | 46.2 |
| Zm00001d024270_P001 | Maize | nucleus | 45.4 | 46.04 |
| HORVU0Hr1G007380.3 | Barley | mitochondrion, nucleus | 45.4 | 46.04 |
| TraesCS4A01G333900.1 | Wheat | nucleus | 45.09 | 45.73 |
| TraesCS5D01G538200.3 | Wheat | nucleus | 44.93 | 45.71 |
| TraesCS5B01G551800.1 | Wheat | nucleus | 44.93 | 45.64 |
| Zm00001d049390_P001 | Maize | nucleus | 44.46 | 45.17 |
| CDY49107 | Canola | nucleus | 22.78 | 30.74 |
| CDY03018 | Canola | nucleus | 22.31 | 30.56 |
| CDX81615 | Canola | cytosol | 21.84 | 30.5 |
| CDY33769 | Canola | nucleus | 22.78 | 30.1 |
| CDY39336 | Canola | mitochondrion | 22.0 | 29.81 |
| CDY60930 | Canola | nucleus | 24.34 | 29.32 |
| CDX69536 | Canola | nucleus | 24.18 | 29.14 |
| CDY45180 | Canola | cytosol | 18.72 | 28.37 |
| CDX70604 | Canola | nucleus | 24.18 | 26.72 |
| CDX78623 | Canola | nucleus | 24.49 | 26.17 |
| CDY51849 | Canola | cytosol | 4.06 | 24.53 |
| CDX96185 | Canola | nucleus | 23.4 | 23.4 |
| CDX84522 | Canola | nucleus | 26.83 | 23.21 |
| CDY56908 | Canola | nucleus | 22.93 | 23.11 |
| CDY49453 | Canola | nucleus | 22.93 | 22.9 |
| CDY27030 | Canola | nucleus | 23.71 | 22.86 |
| CDY52947 | Canola | plastid | 20.28 | 22.57 |
| CDY46555 | Canola | plastid | 20.28 | 22.38 |
| CDY25609 | Canola | cytosol | 20.9 | 21.58 |
| CDX89490 | Canola | cytosol | 20.75 | 21.49 |
| CDY13742 | Canola | mitochondrion | 20.75 | 21.25 |
| CDX76904 | Canola | mitochondrion, nucleus, peroxisome, plastid | 20.75 | 21.08 |
| CDX89376 | Canola | cytosol | 12.48 | 18.82 |
| CDY64706 | Canola | nucleus | 11.86 | 18.81 |
| CDX74180 | Canola | cytosol | 16.07 | 18.29 |
| CDY65294 | Canola | cytosol | 12.48 | 18.22 |
| CDY49999 | Canola | cytosol, endoplasmic reticulum, nucleus | 13.57 | 18.12 |
| CDX92741 | Canola | cytosol | 13.88 | 18.05 |
| CDY40663 | Canola | cytosol | 15.76 | 17.94 |
| CDY42768 | Canola | cytosol | 13.73 | 17.85 |
Protein Annotations
| Gene3D:3.30.1370.10 | MapMan:35.1 | GO:A0A078H4A3 | UniProt:A0A078H4A3 | EnsemblPlants:CDY33460 | ProteinID:CDY33460 |
| ProteinID:CDY33460.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00054699001 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | PFAM:PF00013 |
| PFscan:PS50084 | PANTHER:PTHR10288 | PANTHER:PTHR10288:SF137 | SMART:SM00322 | SUPFAM:SSF54791 | UniParc:UPI0004EEFFC9 |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g36130DBnaA06g36130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4A3]
Coordinates
chrLK032315:-:28622..32010
Molecular Weight (calculated)
69205.1 Da
IEP (calculated)
8.334
GRAVY (calculated)
-0.329
Length
641 amino acids
Sequence
(BLAST)
(BLAST)
001: MVERGNKRTH NRTDNNNRNQ KRRLSHQTEE KLNNKDDLVV YRILCPSVVI GSVIGKSGKV INTIRQETRA RIKVVDPFPG CTERVLTIYC TVNDKKDIVD
101: IENSDHQITP LCSAQDALLK LHEAIVASLA TAAENSKIGR DDIRECRLLV PTSQCSNVIG KAGSTVKKVR SRTGASVKIV SKDVSDPSHA CAMDFDNIVS
201: ISGGAESVKK ALFAVSAIMY KFSPKEQIPL DATVQEAPAS IIIPSDLSIY PQTGLYQSQD PIFQHGANVP SFIGTLPQGY GETATPVFSS SALPVVHHGT
301: FGGVSSSSRQ EELVVKVLCS SSNIGRVIGK GGSTIKGIRQ ASGSHIEVND SRARANHDED CVIIVTSKES PDDLKSMAVE AVLLLQEKIN DEDEEKPKMQ
401: LLVPSKVIGC IIGKSGSIIS EIRKKTNANI YISKENNKCA DLNDELVEIS GEASNVRDAL IQIVLRLRDD VLRDRETSGF RNQQPPARSE KSSFFSSSER
501: SSNAAALALT PSFMSSVPQV ASVDYDRRPE TGMSGGLYGY GSFPVGDNSY GSNSSYSSSR YGGLPQSSTT IMEIRIPSNA VGKVMGRGGG NLDNIRRISG
601: AMIEISDSKS SSHGGRIALI SGTSEQKRTA ENLFQAFIMS T
101: IENSDHQITP LCSAQDALLK LHEAIVASLA TAAENSKIGR DDIRECRLLV PTSQCSNVIG KAGSTVKKVR SRTGASVKIV SKDVSDPSHA CAMDFDNIVS
201: ISGGAESVKK ALFAVSAIMY KFSPKEQIPL DATVQEAPAS IIIPSDLSIY PQTGLYQSQD PIFQHGANVP SFIGTLPQGY GETATPVFSS SALPVVHHGT
301: FGGVSSSSRQ EELVVKVLCS SSNIGRVIGK GGSTIKGIRQ ASGSHIEVND SRARANHDED CVIIVTSKES PDDLKSMAVE AVLLLQEKIN DEDEEKPKMQ
401: LLVPSKVIGC IIGKSGSIIS EIRKKTNANI YISKENNKCA DLNDELVEIS GEASNVRDAL IQIVLRLRDD VLRDRETSGF RNQQPPARSE KSSFFSSSER
501: SSNAAALALT PSFMSSVPQV ASVDYDRRPE TGMSGGLYGY GSFPVGDNSY GSNSSYSSSR YGGLPQSSTT IMEIRIPSNA VGKVMGRGGG NLDNIRRISG
601: AMIEISDSKS SSHGGRIALI SGTSEQKRTA ENLFQAFIMS T
001: MVERGKRTHN RFRDNNNDNN RNQRRRLSYE SEEKKIDNKD DLVVVYRILC PSGVMGSVIG KSGKVINLIR QETRARIKVV DPFPGCSERV ITIFCSVSEK
101: KDIVDIEYSE LDYSVPLCSA QAALLKVHDA IVASLATAAE NTKIDRDDFR ECRLLVPSSQ CSIVIGKSGS IIKNIRGRTR ANVKVVSKDV SDPSHTCAMD
201: FDNIVMISGE TESVKKALFA VSAIMYKVSP REQIPLDTTV QEVPASIIIP SDLSIYPQAG LYPSQDSIFQ HGANVSSFIG TLPQGYGENA ANPVPVFSAS
301: ALPVVHGFGG SSRSEKLAIK VICSSSKIGR VIGKGGLTIK GIRQASGSHI EVNDSRTNHD DDCVITVTAT ESPDDLKSMA VEAVLLLQEK INDEDEDKVK
401: MQLLVSSKVI GCIIGKSGSI ISEIRKRTKA DIHISKGNNT PKCADPNDEL VEISGEVSNV RDALIQIVLR LRDDVLRDRE TGSRNQPPAR SENNNFFSSS
501: SSNTGLALPQ SFMSSVPQVA SVDFNRRPET GSSMSMLPSS GGIYGYGSFP VGNTSYGSNS SYSSNLYGGL PQSTTMEVRI PANAVGKVMG RGGGNLDNIR
601: RISGAMIEIS DSKNSHGGRV ALISGTSEQK RTAENLFQAF IMST
101: KDIVDIEYSE LDYSVPLCSA QAALLKVHDA IVASLATAAE NTKIDRDDFR ECRLLVPSSQ CSIVIGKSGS IIKNIRGRTR ANVKVVSKDV SDPSHTCAMD
201: FDNIVMISGE TESVKKALFA VSAIMYKVSP REQIPLDTTV QEVPASIIIP SDLSIYPQAG LYPSQDSIFQ HGANVSSFIG TLPQGYGENA ANPVPVFSAS
301: ALPVVHGFGG SSRSEKLAIK VICSSSKIGR VIGKGGLTIK GIRQASGSHI EVNDSRTNHD DDCVITVTAT ESPDDLKSMA VEAVLLLQEK INDEDEDKVK
401: MQLLVSSKVI GCIIGKSGSI ISEIRKRTKA DIHISKGNNT PKCADPNDEL VEISGEVSNV RDALIQIVLR LRDDVLRDRE TGSRNQPPAR SENNNFFSSS
501: SSNTGLALPQ SFMSSVPQVA SVDFNRRPET GSSMSMLPSS GGIYGYGSFP VGNTSYGSNS SYSSNLYGGL PQSTTMEVRI PANAVGKVMG RGGGNLDNIR
601: RISGAMIEIS DSKNSHGGRV ALISGTSEQK RTAENLFQAF IMST
Arabidopsis Description
RNA-binding KH domain-containing protein [Source:TAIR;Acc:AT5G46190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.