CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45180	Canola	cytosol	84.62	93.62
AT2G03110.1	Thale cress	cytosol	24.36	74.51
CDX81615	Canola	cytosol	72.01	73.42
CDY33769	Canola	nucleus	72.86	70.31
CDY39336	Canola	mitochondrion	69.44	68.71
CDY49107	Canola	nucleus	69.02	68.0
CDY51849	Canola	cytosol	15.17	66.98
VIT_01s0026g02650.t01	Wine grape	nucleus	58.12	47.55
PGSC0003DMT400047374	Potato	nucleus	51.28	45.03
Solyc05g007810.2.1	Tomato	nucleus	50.85	44.74
Os03t0376800-02	Rice	nucleus	51.07	44.1
Zm00001d029328_P002	Maize	nucleus	50.85	43.99
GSMUA_Achr7P11520_001	Banana	mitochondrion, nucleus	49.57	43.77
GSMUA_Achr6P10750_001	Banana	nucleus	49.57	43.61
KXG39277	Sorghum	nucleus	50.43	43.54
CDY60930	Canola	nucleus	48.72	42.86
TraesCS4A01G150800.1	Wheat	nucleus	49.15	42.67
CDX69536	Canola	nucleus	47.44	41.73
TraesCS4B01G166500.2	Wheat	nucleus	48.72	40.5
TraesCS4D01G160700.2	Wheat	nucleus	48.5	40.32
HORVU4Hr1G049680.1	Barley	nucleus	49.57	39.86
CDX70604	Canola	nucleus	47.01	37.93
CDX78623	Canola	nucleus	47.22	36.83
CDX99471	Canola	nucleus	14.1	30.7
CDX78846	Canola	nucleus	28.63	23.34
CDY33460	Canola	nucleus	30.56	22.31
CDX77643	Canola	nucleus	30.34	22.22
CDX96185	Canola	nucleus	27.35	19.97
CDY56908	Canola	nucleus	27.14	19.97
CDY49453	Canola	nucleus	27.35	19.94
CDY27030	Canola	nucleus	28.21	19.85
CDX99470	Canola	nucleus	10.9	18.82
CDY46555	Canola	plastid	22.01	17.73
CDY52947	Canola	plastid	21.58	17.53
CDY64706	Canola	nucleus	14.96	17.33
CDX84522	Canola	nucleus	27.35	17.27
CDY13742	Canola	mitochondrion	22.22	16.61
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	22.22	16.48
CDX92741	Canola	cytosol	17.31	16.43
CDX89376	Canola	cytosol	14.74	16.24
CDY42768	Canola	cytosol	17.09	16.23
CDY25609	Canola	cytosol	21.37	16.1
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	16.45	16.04
CDY40663	Canola	cytosol	19.02	15.81
CDX74180	Canola	cytosol	19.02	15.81
CDX89490	Canola	cytosol	20.73	15.67
CDY65294	Canola	cytosol	14.53	15.49

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:A0A078ETX2	EnsemblPlants:CDY03018	ProteinID:CDY03018
ProteinID:CDY03018.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00115328001
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF149	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0004EEA69D	SEG:seg

Description

BnaC07g22090D

Coordinates

chrLK031939:-:383690..386056

Molecular Weight (calculated)

51402.8 Da

IEP (calculated)

5.056

GRAVY (calculated)

-0.338

Length

468 amino acids

Sequence
(BLAST)

001: MAANTRNIYD NNGVGSEDTV YRYLCPVRKA GSIIGKGGEI AKQIRSETKA NMRINEALPG CDERVVTIYS TSEETNCIGD DEEFACPAFD ALLKVHNMVV
101: AGEGDSYGYD EYSEKYTVAA RMLVASDQIG CLIGKGGQVI QKLREETNAQ IRVINDNLPL CALALSNDEL LQIIGEPLAV REALYQVASL LYDNPSRFQH
201: YFLSSSSSSL HQQQSGGMLM NPPLTSSHKN YSASRDVAEA REFSICFICP AENVGGVIGK GGSFINQIRQ ESGAVIKVNT SETDEDDDCI IFISSKEFFE
301: DQSPTVDAAL RLQMRCSEKV GKDSTDSAIS TRVLVPSSRV GCLIGKGGAI ISEMRGVTKA NIRIVQGEDV PQIAREDEEM VQITGSLDAA IKALTQVMLR
401: LRASVFDMDR GLVLLPTFFP YISQATETSS KPKQRKRENH SHGSMEIGRN EDYGNQMNSN SHRRNHVY

Best Arabidopsis Sequence Match ( AT1G14170.1 )
(BLAST)

001: MASTLRNIHD QNVIASEDTV YRYLCPVKKT GSIIGKGGEI AKQIRSETKS NMRINEALPG CEERVVTMYS TNEELNHFGD DGELVCPALD ALFKVHDMVV
101: ADADQDDGTD DDNDLGEKQT VTVRMLVPSD QIGCVIGKGG QVIQNLRNDT NAQIRVIKDH LPACALTLSH DELLLIIGEP LVVREALYQV ASLLHDNPSR
201: FQHLLLSSSS SSMHQPGAML MSAALTSSHR NYAVRRDIAD AREFCVCFIC PAENVGGVIG KGGGFINQIR QETGATIRVN TSETDDDDCI IFISSKEFYE
301: DQSPAVNAAI RLQQRCSEKV GKDANDLAIS TRLLVSSSQI GCLIGKGGAV ISEMRSVTRA NIRILQKEDV PKIAREDEEM VQITGSPDAA MKALTQVILR
401: LRANSFDMDH GLVLLPTSFP YIPQVTESSS KSKYAKRDDH SKLNSNSKRR NHVS

Arabidopsis Description

F7A19.25 protein [Source:UniProtKB/TrEMBL;Acc:Q9XI71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.