Factsheet for GSMUA_Achr6P10750_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P11520_001	Banana	mitochondrion, nucleus	73.31	73.58
KXG39277	Sorghum	nucleus	65.41	64.21
Zm00001d029328_P002	Maize	nucleus	65.23	64.14
Os03t0376800-02	Rice	nucleus	64.1	62.92
TraesCS4A01G150800.1	Wheat	nucleus	62.41	61.6
TraesCS4D01G160700.2	Wheat	nucleus	62.97	59.5
TraesCS4B01G166500.2	Wheat	nucleus	62.97	59.5
VIT_01s0026g02650.t01	Wine grape	nucleus	63.35	58.92
HORVU4Hr1G049680.1	Barley	nucleus	63.16	57.73
Bra019674.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	42.48	55.26
AT2G03110.1	Thale cress	cytosol	15.41	53.59
PGSC0003DMT400047374	Potato	nucleus	53.01	52.91
CDX81615	Canola	cytosol	45.3	52.51
Solyc05g007810.2.1	Tomato	nucleus	52.44	52.44
Bra026852.1-P	Field mustard	nucleus	47.74	52.37
CDY33769	Canola	nucleus	47.74	52.37
AT1G14170.3	Thale cress	cytosol, mitochondrion, nucleus, plastid	46.99	52.19
CDY39336	Canola	mitochondrion	45.86	51.59
CDY49107	Canola	nucleus	46.05	51.58
CDY03018	Canola	nucleus	43.61	49.57
CDY45180	Canola	cytosol	37.59	47.28
Bra024789.1-P	Field mustard	cytosol	32.33	45.74
CDY51849	Canola	cytosol	7.52	37.74
GSMUA_Achr3P21030_001	Banana	nucleus	37.78	30.18
GSMUA_Achr10P...	Banana	cytosol	33.46	26.89
GSMUA_Achr6P13890_001	Banana	cytosol	33.08	26.87
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	32.33	26.42
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	31.95	24.6
GSMUA_Achr10P...	Banana	nucleus	29.89	23.59
GSMUA_Achr7P01590_001	Banana	nucleus	18.98	22.95
GSMUA_Achr2P15270_001	Banana	nucleus	28.38	21.73
GSMUA_Achr5P03200_001	Banana	cytosol	9.59	19.25
GSMUA_Achr8P14980_001	Banana	cytosol	18.05	17.14
GSMUA_Achr11P...	Banana	mitochondrion	18.05	16.75

Protein Annotations

EnsemblPlants:GSMUA_Achr6P10750_001	EnsemblPlants:GSMUA_Achr6T10750_001	EnsemblPlantsGene:GSMUA_Achr6G10750_001	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288	PANTHER:PTHR10288:SF151	PFAM:PF00013	PFscan:PS50084	SEG:seg
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI000295DD70	UniProt:M0T5X4	MapMan:35.1	:

Description

Putative KH domain-containing protein At4g18375 [Source:GMGC_GENE;Acc:GSMUA_Achr6G10750_001]

Coordinates

chr6:+:7165849..7169408

Molecular Weight (calculated)

57385.7 Da

IEP (calculated)

5.721

GRAVY (calculated)

-0.222

Length

532 amino acids

Sequence
(BLAST)

001: MGGQRNSYGK RSHSNSEYTD NGGSKRRNPG EDRENYAPGP DDTVYRCLCP GRKIGSIIGR GGEIVKQLRS DTQAKIRIGE TLPGCEERVI TIFSTSKETN
101: KFEDTGDNVC PAQDALFKVH ERLVNDEAMG EEDTDVDTTQ VTLRLLVPSD QIGCIIGKGG QIIQGIRSDS GAQIRILKND HLPACAISSD ELLQITGEAS
201: VVKKALFQVS SRLHDNPSRS QHLLVPGTPQ VYPVAGQFGV PNNSAPIVGL GPLMGSYGGY KGDAVGEWPS LYPPPRDESS AKEFSLRLLC PAANIGGVIG
301: KGGVIIKQIR QESGASIKVD SSKSEDECII LISSKEFFED PISPAIDAAV RLQSRCSEKS EKESGEPSYT TRLLVPTSRI GCLIGKGGTI ISEMRRSTRA
401: NIRILSKENL PKVAAEDDEM VQICGELDIA RNALIQVTTR LKANFFEREG ALSAFPSSAP YHPLPMDAPD VIHLHLIITA AMGVLREVVV MVHIVDTLPA
501: LAVLGYLVQS LFPMGNIMVT SIPNELGPTA EV

Best Arabidopsis Sequence Match ( AT5G15270.3 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.