Factsheet for Solyc05g007810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047374	Potato	nucleus	95.3	95.12
VIT_01s0026g02650.t01	Wine grape	nucleus	67.29	62.59
GSMUA_Achr7P11520_001	Banana	mitochondrion, nucleus	58.27	58.49
Zm00001d029328_P002	Maize	nucleus	57.33	56.38
CDX81615	Canola	cytosol	47.93	55.56
Bra019674.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	42.67	55.5
KXG39277	Sorghum	nucleus	56.02	54.98
TraesCS4A01G150800.1	Wheat	nucleus	55.45	54.73
AT2G03110.1	Thale cress	cytosol	15.6	54.25
Os03t0376800-02	Rice	nucleus	55.26	54.24
Bra026852.1-P	Field mustard	nucleus	49.44	54.23
CDY33769	Canola	nucleus	49.44	54.23
AT1G14170.3	Thale cress	cytosol, mitochondrion, nucleus, plastid	47.93	53.24
CDY49107	Canola	nucleus	46.99	52.63
GSMUA_Achr6P10750_001	Banana	nucleus	52.44	52.44
CDY39336	Canola	mitochondrion	46.24	52.01
HORVU4Hr1G049680.1	Barley	nucleus	56.02	51.2
TraesCS4B01G166500.2	Wheat	nucleus	54.14	51.15
Solyc02g088120.2.1	Tomato	nucleus	50.38	51.05
TraesCS4D01G160700.2	Wheat	nucleus	53.95	50.98
CDY03018	Canola	nucleus	44.74	50.85
Solyc02g067210.2.1	Tomato	nucleus	57.33	49.51
CDY45180	Canola	cytosol	38.91	48.94
Bra024789.1-P	Field mustard	cytosol	33.83	47.87
CDY51849	Canola	cytosol	8.08	40.57
Solyc12g055790.1.1	Tomato	nucleus	13.53	28.92
Solyc04g077060.2.1	Tomato	nucleus	24.44	27.48
Solyc03g034200.2.1	Tomato	nucleus	35.53	26.73
Solyc08g048500.2.1	Tomato	nucleus	29.32	25.28
Solyc05g041740.1.1	Tomato	plastid	9.59	24.29
Solyc11g010840.1.1	Tomato	plastid	24.81	21.53
Solyc01g106020.2.1	Tomato	plastid	25.56	21.05
Solyc09g066120.2.1	Tomato	nucleus	18.98	20.53
Solyc05g043210.1.1	Tomato	plastid	9.59	20.16
Solyc07g008490.2.1	Tomato	nucleus	18.23	20.12
Solyc12g055780.1.1	Tomato	cytosol, nucleus	13.91	20.0
Solyc01g090480.2.1	Tomato	nucleus	16.54	19.82
Solyc03g082980.2.1	Tomato	nucleus	24.81	19.76
Solyc01g097010.2.1	Tomato	nucleus	13.35	19.56
Solyc08g074330.1.1	Tomato	plastid	7.89	18.5
Solyc06g084000.2.1	Tomato	nucleus	7.14	16.03
Solyc05g042180.1.1	Tomato	plastid	7.89	15.38
Solyc06g084010.2.1	Tomato	nucleus	9.02	14.86
Solyc05g043200.1.1	Tomato	nucleus, peroxisome, plastid	8.27	13.75

Protein Annotations

EnsemblPlants:Solyc05g007810.2.1	EnsemblPlantsGene:Solyc05g007810.2	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
PANTHER:PTHR10288	PANTHER:PTHR10288:SF149	PFAM:PF00013	PFscan:PS50084	SEG:seg	SMART:SM00322
SUPFAM:SSF54791	UniParc:UPI0002765EB6	UniProt:K4BWV6	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr5:-:2247886..2252833

Molecular Weight (calculated)

57178.9 Da

IEP (calculated)

6.519

GRAVY (calculated)

-0.473

Length

532 amino acids

Sequence
(BLAST)

001: MAGQRNNYGK RMQSESDYSR SDGSKRRTPT DEKESNSIGP EDTVFRYLCP TGKIGSIIGV GGDIAKQLRT ETNSKIRISE TIPGCEERVV TIYSGSEETN
101: ISEDTGDLIS PAQDALFRVH DRVLAEELRM DEDLEDHQIT VRMIVPSDQI GCVIGNAGQV IQNLRSETGA QIRVLSSEHL PPCALNSDEL LQITGEVAVV
201: KRALYQVAAR LHDNPSRSQH QLLSSPSIYR SGAGLVNPHA GSQVMGVTSL MGPYASYKSD GRSRSSSVKE FAVRLVCPIE NVGAVIGKGG GVIKQLRQES
301: GASIKVDSAA AEGDDCIIFV SAKETFEDQS PTIDATMRLQ PRSSEKTEKE SGDAILTTRL LVPSSRVGCL IGKGGSIITE MRNSTRASIR VLSKENHPKV
401: ASVDDEMVQI TGDANVAANA LLQVLMRLRA NAFEMEGSFP AFSPGLSYAP MPASVPDGSR YGNRDNRSRR HGYSSYSGGH DYSDLSPRDS YGGSQVGNGG
501: NYAPYGVYSS GRPSSSGVSS HNPSAYGKSY GY

Best Arabidopsis Sequence Match ( AT5G15270.1 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSGLSSHSST YRRRNYDY

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.