Factsheet for Solyc02g067210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
golgi 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	golgi, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064701	Potato	nucleus	88.8	98.56
VIT_14s0108g01040.t01	Wine grape	nucleus	66.4	74.64
Solyc02g088120.2.1	Tomato	nucleus	62.18	72.95
KRG93559	Soybean	nucleus	61.04	68.61
KRH18467	Soybean	nucleus	60.23	67.7
KRH40065	Soybean	nucleus	59.09	67.41
KRH01196	Soybean	nucleus	59.25	67.22
VIT_09s0002g00070.t01	Wine grape	mitochondrion	13.64	65.62
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	24.19	63.14
AT5G15270.2	Thale cress	nucleus	53.73	60.4
Bra008709.1-P	Field mustard	nucleus	49.84	59.38
CDY60930	Canola	nucleus	50.97	59.02
CDX69536	Canola	nucleus	50.97	59.02
Solyc05g007810.2.1	Tomato	nucleus	49.51	57.33
VIT_14s0006g00030.t01	Wine grape	cytosol	26.3	57.24
KRH58152	Soybean	cytosol	11.69	56.69
CDX70604	Canola	nucleus	51.79	55.0
Bra006294.1-P	Field mustard	nucleus	52.11	53.5
CDX78623	Canola	nucleus	52.11	53.5
Solyc12g055790.1.1	Tomato	nucleus	12.01	29.72
Solyc04g077060.2.1	Tomato	nucleus	21.1	27.48
Solyc03g034200.2.1	Tomato	nucleus	30.68	26.73
Solyc08g048500.2.1	Tomato	nucleus	25.65	25.61
Solyc05g041740.1.1	Tomato	plastid	8.28	24.29
Solyc11g010840.1.1	Tomato	plastid	21.92	22.02
Solyc03g082980.2.1	Tomato	nucleus	23.86	22.01
Solyc01g106020.2.1	Tomato	plastid	23.05	21.98
Solyc12g055780.1.1	Tomato	cytosol, nucleus	13.15	21.89
Solyc01g097010.2.1	Tomato	nucleus	11.85	20.11
Solyc09g066120.2.1	Tomato	nucleus	15.42	19.31
Solyc07g008490.2.1	Tomato	nucleus	15.1	19.29
Solyc01g090480.2.1	Tomato	nucleus	13.8	19.14
Solyc05g043210.1.1	Tomato	plastid	7.79	18.97
Solyc06g084000.2.1	Tomato	nucleus	6.49	16.88
Solyc05g042180.1.1	Tomato	plastid	7.14	16.12
Solyc08g074330.1.1	Tomato	plastid	5.68	15.42
Solyc06g084010.2.1	Tomato	nucleus	7.95	15.17
Solyc05g043200.1.1	Tomato	nucleus, peroxisome, plastid	6.66	12.81

Protein Annotations

Gene3D:3.30.310.210	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR036612	UniProt:K4B753	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013
PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF151	SMART:SM00322	SUPFAM:SSF54791	EnsemblPlantsGene:Solyc02g067210.2
EnsemblPlants:Solyc02g067210.2.1	UniParc:UPI00027691BF	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:-:37397566..37403805

Molecular Weight (calculated)

66745.4 Da

IEP (calculated)

7.399

GRAVY (calculated)

-0.444

Length

616 amino acids

Sequence
(BLAST)

001: MKKGLEGRST WPIDIRNGGL TISGQNPSSY KSTPCSIISL FCLLFAWFLP EDSSSVPSIF AMAGRRDSYG KRSHSQSDYG ENGGNKRRNT RNDKDPFSIG
101: PDDTVYRYLC SVKKIGSIIG KGGEIVKQLR VDTKSKIRIG ETVPDCDERV VTIYSSSEET NEFDGTEVRV CPAQDALFRV YDKIISDDTT DENSEEASQV
201: TVKLLVPSDQ IGCIIGKGGQ IVQDIRSETG AQIRILKDKH LPACALSSDE LVQISGEVAV VRKALFEVAT RLHNNPSRTQ HILASDAPTI YSSRSSLIGS
301: AGGAPIVGIA PLVGPYGGYK GESSDWSRSF YSAPRDESSS KEFSLRLVCP AANIGGVIGK GGVIINQIRQ ESGAVIKVNS SNAEGDNCVI SISAKEFFED
401: TYSPTIEAAL RLQPRCREEV ERDSGLISVT TRLLVPASRI GCLIGKGGSI INEMRKITKA NIRILSKEDL PKVASNDDEM VQISGDPDAS KDALMQVTSR
501: LRANLFEKEG PMSAFVPVLP YLPMSTDSDT LKYEHRDTRR QGREHSYSAG YGGTSDLPHA DGFGSYGTLQ SSSSVGYGAY EGYSPAYPKE GYSHGRSSGS
601: GSSRQNSAPR RKSYGY

Best Arabidopsis Sequence Match ( AT5G15270.3 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.