CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40065	Soybean	nucleus	97.61	98.15
KRH58152	Soybean	cytosol	19.15	81.89
KRG93559	Soybean	nucleus	79.19	78.47
KRH18467	Soybean	nucleus	78.27	77.55
VIT_14s0108g01040.t01	Wine grape	nucleus	74.59	73.91
PGSC0003DMT400064701	Potato	nucleus	68.14	66.67
PGSC0003DMT400003371	Potato	nucleus	65.93	66.17
VIT_09s0002g00070.t01	Wine grape	mitochondrion	15.1	64.06
AT5G15270.2	Thale cress	nucleus	62.62	62.04
CDY60930	Canola	nucleus	59.67	60.9
Bra008709.1-P	Field mustard	nucleus	57.27	60.15
CDX69536	Canola	nucleus	58.56	59.77
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	25.78	59.32
Solyc02g067210.2.1	Tomato	nucleus	67.22	59.25
Solyc02g088120.2.1	Tomato	nucleus	57.09	59.05
CDX70604	Canola	nucleus	61.51	57.59
CDX78623	Canola	nucleus	61.69	55.83
Bra006294.1-P	Field mustard	nucleus	61.33	55.5
VIT_14s0006g00030.t01	Wine grape	cytosol	27.26	52.3
KRH58669	Soybean	endoplasmic reticulum, nucleus	30.76	26.89
KRH42565	Soybean	nucleus	30.94	26.88
KRH42077	Soybean	plastid	28.18	26.06
KRH49838	Soybean	plastid	28.18	25.93
KRH00973	Soybean	nucleus, plastid	16.94	25.41
KRH47290	Soybean	mitochondrion, nucleus	25.97	25.22
KRH44614	Soybean	mitochondrion, nucleus	25.97	24.96
KRH52837	Soybean	plastid	30.94	24.85
KRH62129	Soybean	plastid	30.57	24.48
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	19.15	23.48
KRH40252	Soybean	cytosol, golgi, nucleus, plastid	16.76	23.45
KRH21739	Soybean	plastid	30.76	23.36
KRH02776	Soybean	nucleus	18.6	23.17
KRH19104	Soybean	nucleus	18.42	22.94
KRG97000	Soybean	nucleus	18.78	22.87
KRH39475	Soybean	plastid	25.05	22.26
KRH64403	Soybean	nucleus	26.15	22.05
KRH53532	Soybean	nucleus	26.15	21.95
KRH37335	Soybean	cytosol, nucleus	17.86	21.9
KRH74462	Soybean	nucleus	24.68	21.75
KRH12329	Soybean	cytosol, nucleus	17.68	21.72
KRH10613	Soybean	plastid	28.91	21.6
KRH67322	Soybean	nucleus	20.07	20.6
KRG95633	Soybean	nucleus	20.07	20.3
KRH71306	Soybean	nucleus	17.86	19.6
KRH32136	Soybean	cytosol	20.07	19.29

Protein Annotations

EntrezGene:100793526	Gene3D:3.30.310.210	MapMan:35.1	EMBL:ACUP02011507	EnsemblPlantsGene:GLYMA_18G261100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	UniProt:K7MUT7	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlants:KRH01196	ProteinID:KRH01196	ProteinID:KRH01196.1	ProteinID:KRH01197.1
ProteinID:KRH01198.1	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF151	SMART:SM00322
SUPFAM:SSF54791	UniParc:UPI000233E9DC	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:54701324..54706323

Molecular Weight (calculated)

57803.8 Da

IEP (calculated)

7.223

GRAVY (calculated)

-0.403

Length

543 amino acids

Sequence
(BLAST)

001: MTGQRISYGK RSHSHSDSDA GSKNKRRNPA ADDSSSSLIT ADDTVFRYLC PVRKIGSVIG RGGDIVKQLR ADTKAKIRIG DALPGCDERV VTIHSSSEET
101: NHFDETGDLV SPAQDALFRV HQRVIAEDAR EDEDDERNHV TAKLLVPSDQ IGCVIGKGGQ IVQNIRSETG AQIRILKDDR LPPCALSNDE LVQISGEAAV
201: VKKALFQIAA QIRDNPSRSQ HLLASAVPGG YAAGGPGAGA PIMGVAPFVG AYGGYKGDTG DWSRSLYPAP RDEASMREFS VRFVCPTGNI GGVIGKGGAI
301: INQIRQDSGA TIKVDSSATE GDDCLIIISM KEFFEDSFSP TIEAAVRLQP RCSEKVERDS GIVSFTTRLL VPTSRIGCLI GKGGTIVTEM RRLTKANIRI
401: LSKENLPKIA SEDDEMVQIS GDLDVAKDAL VQALTRLRAN LFDKERAVSG FLPVLPYLPA SVDGSDGLNY DSRDGKRHGR GGYSSGYGGS SDLASGDGYG
501: SYGNSQLGSG GGAYGAYGNY SLGRTSAYGS SQNGSSRRRN HAY

Best Arabidopsis Sequence Match ( AT1G14170.1 )
(BLAST)

001: MASTLRNIHD QNVIASEDTV YRYLCPVKKT GSIIGKGGEI AKQIRSETKS NMRINEALPG CEERVVTMYS TNEELNHFGD DGELVCPALD ALFKVHDMVV
101: ADADQDDGTD DDNDLGEKQT VTVRMLVPSD QIGCVIGKGG QVIQNLRNDT NAQIRVIKDH LPACALTLSH DELLLIIGEP LVVREALYQV ASLLHDNPSR
201: FQHLLLSSSS SSMHQPGAML MSAALTSSHR NYAVRRDIAD AREFCVCFIC PAENVGGVIG KGGGFINQIR QETGATIRVN TSETDDDDCI IFISSKEFYE
301: DQSPAVNAAI RLQQRCSEKV GKDANDLAIS TRLLVSSSQI GCLIGKGGAV ISEMRSVTRA NIRILQKEDV PKIAREDEEM VQITGSPDAA MKALTQVILR
401: LRANSFDMDH GLVLLPTSFP YIPQVTESSS KSKYAKRDDH SKLNSNSKRR NHVS

Arabidopsis Description

F7A19.25 protein [Source:UniProtKB/TrEMBL;Acc:Q9XI71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.