Factsheet for VIT_14s0006g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g00070.t01	Wine grape	mitochondrion	28.98	64.06
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	50.88	61.02
KRH58152	Soybean	cytosol	19.08	42.52
VIT_14s0108g01040.t01	Wine grape	nucleus	68.55	35.4
PGSC0003DMT400003371	Potato	nucleus	56.54	29.57
KRG93559	Soybean	nucleus	56.54	29.2
PGSC0003DMT400064701	Potato	nucleus	56.89	29.01
KRH18467	Soybean	nucleus	55.83	28.83
KRH40065	Soybean	nucleus	52.3	27.41
KRH01196	Soybean	nucleus	52.3	27.26
VIT_01s0026g02650.t01	Wine grape	nucleus	53.71	26.57
Solyc02g088120.2.1	Tomato	nucleus	49.12	26.48
Solyc02g067210.2.1	Tomato	nucleus	57.24	26.3
AT5G15270.2	Thale cress	nucleus	48.41	25.0
CDX70604	Canola	nucleus	47.0	22.93
CDY60930	Canola	nucleus	42.76	22.74
CDX78623	Canola	nucleus	47.35	22.33
Bra008709.1-P	Field mustard	nucleus	40.64	22.24
Bra006294.1-P	Field mustard	nucleus	47.0	22.17
CDX69536	Canola	nucleus	41.34	21.99
VIT_15s0021g01940.t01	Wine grape	nucleus	19.08	15.61
VIT_07s0141g00800.t01	Wine grape	cytosol	18.73	12.24
VIT_14s0006g02960.t01	Wine grape	nucleus, plastid	28.98	12.13
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	26.15	11.88
VIT_18s0001g08280.t01	Wine grape	cytosol	28.27	11.41
VIT_09s0054g00450.t01	Wine grape	plastid	26.5	10.65
VIT_03s0038g00420.t01	Wine grape	plastid	24.03	10.49
VIT_11s0052g00030.t01	Wine grape	plastid	16.96	10.3
VIT_16s0098g01660.t01	Wine grape	nucleus	23.67	10.14
VIT_14s0081g00440.t01	Wine grape	cytosol	17.67	9.78

Protein Annotations

Gene3D:3.30.310.210	MapMan:35.2	ProteinID:CCB57599	ProteinID:CCB57599.1	UniProt:F6HSF9	EMBL:FN596245
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013
PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF151	SMART:SM00322	SUPFAM:SSF54791	TMHMM:TMhelix
UniParc:UPI00021096AA	ArrayExpress:VIT_14s0006g00030	EnsemblPlantsGene:VIT_14s0006g00030	EnsemblPlants:VIT_14s0006g00030.t01	:	:

Description

No Description!

Coordinates

chr14:-:13086517..13087505

Molecular Weight (calculated)

31410.4 Da

IEP (calculated)

4.899

GRAVY (calculated)

-0.101

Length

283 amino acids

Sequence
(BLAST)

001: MAGKRNSYEK QAQSQSDYGD NGGNKRINPG DDRNPFTIGP DDTEGREIIK QLRVDTKFKI RIDETVSRCE ELVVTIYNFS DETNAFDDSY TFVSPTQDAL
101: FRVHDKVVSE KVHSEDFEEA SQVTVQLLVT SDQIGCVIGK GGQIIQNIYS ESGAQIYILK NDHLLSCALS FDELVQISGE RPLLGRLFIK LHLFFMIIQH
201: LLASIVPIGY SSGGSLIGPT SGAPIMGLAP LVGTYGGIEV TVETGHAPFT QFHEMRHLQR NFLFVWFVLL ETLVACLGRE VSS

Best Arabidopsis Sequence Match ( AT5G15270.1 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSGLSSHSST YRRRNYDY

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.