CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93559	Soybean	nucleus	96.72	96.72
KRH01196	Soybean	nucleus	77.55	78.27
KRH40065	Soybean	nucleus	76.82	77.96
VIT_14s0108g01040.t01	Wine grape	nucleus	77.55	77.55
PGSC0003DMT400003371	Potato	nucleus	68.61	69.5
PGSC0003DMT400064701	Potato	nucleus	68.25	67.39
VIT_09s0002g00070.t01	Wine grape	mitochondrion	15.69	67.19
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	27.01	62.71
AT5G15270.2	Thale cress	nucleus	62.59	62.59
Solyc02g088120.2.1	Tomato	nucleus	59.31	61.9
CDY60930	Canola	nucleus	59.85	61.65
Bra008709.1-P	Field mustard	nucleus	57.3	60.73
CDX69536	Canola	nucleus	58.58	60.34
Solyc02g067210.2.1	Tomato	nucleus	67.7	60.23
CDX70604	Canola	nucleus	61.5	58.1
CDX78623	Canola	nucleus	61.31	56.0
KRH58152	Soybean	cytosol	12.96	55.91
VIT_14s0006g00030.t01	Wine grape	cytosol	28.83	55.83
Bra006294.1-P	Field mustard	nucleus	60.95	55.67
KRH58669	Soybean	endoplasmic reticulum, nucleus	32.12	28.34
KRH42565	Soybean	nucleus	31.93	28.0
KRH42077	Soybean	plastid	28.1	26.24
KRH44614	Soybean	mitochondrion, nucleus	26.64	25.84
KRH47290	Soybean	mitochondrion, nucleus	26.28	25.76
KRH49838	Soybean	plastid	27.55	25.59
KRH52837	Soybean	plastid	30.84	25.0
KRH00973	Soybean	nucleus, plastid	16.24	24.59
KRH62129	Soybean	plastid	30.11	24.34
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	19.34	23.93
KRH21739	Soybean	plastid	30.47	23.36
KRH40252	Soybean	cytosol, golgi, nucleus, plastid	16.42	23.2
KRG97000	Soybean	nucleus	18.8	23.09
KRH53532	Soybean	nucleus	27.19	23.03
KRH39475	Soybean	plastid	25.36	22.75
KRH74462	Soybean	nucleus	25.55	22.73
KRH19104	Soybean	nucleus	18.07	22.71
KRH64403	Soybean	nucleus	26.64	22.67
KRH02776	Soybean	nucleus	17.88	22.48
KRH10613	Soybean	plastid	28.65	21.6
KRH37335	Soybean	cytosol, nucleus	16.97	20.99
KRH12329	Soybean	cytosol, nucleus	16.79	20.81
KRH67322	Soybean	nucleus	18.98	19.66
KRG95633	Soybean	nucleus	18.8	19.18
KRH71306	Soybean	nucleus	17.15	18.99
KRH32136	Soybean	cytosol	18.98	18.41

Protein Annotations

EntrezGene:100784791	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	EMBL:ACUP02008076	EnsemblPlantsGene:GLYMA_13G062200
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1LWL4	InterPro:IPR036612
InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlants:KRH18467	ProteinID:KRH18467	ProteinID:KRH18467.1
PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF151	SMART:SM00322	SUPFAM:SSF54791
UniParc:UPI00023D0807	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:15985083..15991185

Molecular Weight (calculated)

58267.5 Da

IEP (calculated)

6.789

GRAVY (calculated)

-0.380

Length

548 amino acids

Sequence
(BLAST)

001: MGGQRSGYGK RPHSQSDHDN GPNKRRNHGD DREQFVIDSE DTVYRYVCPG RKIGSVIGRG GEIVKQLRVE TKAKIRIGET VPGCEERVVT IYGPSDETNA
101: VEGGGNYVSP AQDALFKVHD RVVAEDFHGD QDDDGGQQVT AKLLVPSDQI GCVIGKGGSI VQNIRGETGA QIRILKDDHL PMCALSSDEL VQITGDAAVV
201: KKALYQIASR LHDNPSRSQH LLTSAVSGVY PAGGSLIGPG AGAPIVGIAP LVGSYGGYKG DTGDWPPRSM YSAPRDEASS KEFSVRLVCP TGNIGGVIGK
301: GGMIINQIRQ DSGATIKVDS STIEGDECLI AISTKEFFEE TFSPTIEAAV RLQPRCSEKV ERDSGIISFT TRLLVPTTRI GCLIGKGGSI ITDMRRLTKA
401: NIRIISKENL PKIANEDDEM VQISGDLDVA KDALVHVLTR LRANLFDREG ALSAFLPVLP YLPVSADGSD GLNYDGRDGK RHGRGHSYSS GYGGSSDLAA
501: GDVYGSYGGS QLGSNSAYGA YGSYSLGRSS TAGLSSQSGV SRRRNHAY

Best Arabidopsis Sequence Match ( AT5G15270.1 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSGLSSHSST YRRRNYDY

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.