CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01196	Soybean	nucleus	98.15	97.61
KRH58152	Soybean	cytosol	19.63	83.46
KRG93559	Soybean	nucleus	78.89	77.74
KRH18467	Soybean	nucleus	77.96	76.82
VIT_14s0108g01040.t01	Wine grape	nucleus	75.37	74.27
PGSC0003DMT400064701	Potato	nucleus	68.33	66.49
PGSC0003DMT400003371	Potato	nucleus	66.11	65.99
VIT_09s0002g00070.t01	Wine grape	mitochondrion	15.19	64.06
AT5G15270.2	Thale cress	nucleus	62.96	62.04
CDY60930	Canola	nucleus	60.37	61.28
Bra008709.1-P	Field mustard	nucleus	57.96	60.54
CDX69536	Canola	nucleus	59.26	60.15
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	25.93	59.32
Solyc02g067210.2.1	Tomato	nucleus	67.41	59.09
Solyc02g088120.2.1	Tomato	nucleus	57.41	59.05
CDX70604	Canola	nucleus	61.85	57.59
CDX78623	Canola	nucleus	62.04	55.83
Bra006294.1-P	Field mustard	nucleus	61.67	55.5
VIT_14s0006g00030.t01	Wine grape	cytosol	27.41	52.3
KRH58669	Soybean	endoplasmic reticulum, nucleus	31.11	27.05
KRH42565	Soybean	nucleus	31.3	27.04
KRH42077	Soybean	plastid	28.52	26.24
KRH49838	Soybean	plastid	28.52	26.1
KRH00973	Soybean	nucleus, plastid	17.22	25.69
KRH47290	Soybean	mitochondrion, nucleus	25.93	25.04
KRH52837	Soybean	plastid	31.3	25.0
KRH44614	Soybean	mitochondrion, nucleus	25.93	24.78
KRH62129	Soybean	plastid	30.93	24.63
KRH40252	Soybean	cytosol, golgi, nucleus, plastid	17.04	23.71
KRH21739	Soybean	plastid	31.3	23.64
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	18.89	23.02
KRH02776	Soybean	nucleus	18.33	22.71
KRH64403	Soybean	nucleus	27.04	22.67
KRH53532	Soybean	nucleus	27.04	22.57
KRH19104	Soybean	nucleus	18.15	22.48
KRG97000	Soybean	nucleus	18.52	22.42
KRH39475	Soybean	plastid	24.81	21.93
KRH10613	Soybean	plastid	29.44	21.87
KRH12329	Soybean	cytosol, nucleus	17.59	21.49
KRH37335	Soybean	cytosol, nucleus	17.59	21.44
KRH74462	Soybean	nucleus	24.44	21.43
KRH67322	Soybean	nucleus	20.0	20.42
KRG95633	Soybean	nucleus	20.0	20.11
KRH71306	Soybean	nucleus	17.78	19.39
KRH32136	Soybean	cytosol	20.0	19.11

Protein Annotations

EntrezGene:100787863	Gene3D:3.30.310.210	MapMan:35.1	EMBL:ACUP02006017	EnsemblPlantsGene:GLYMA_09G235900	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1L5V5	InterPro:IPR036612	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlants:KRH40065	ProteinID:KRH40065	ProteinID:KRH40065.1	ProteinID:KRH40066.1
ProteinID:KRH40067.1	ProteinID:KRH40068.1	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF151
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI000233848D	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:-:45850034..45854839

Molecular Weight (calculated)

57545.4 Da

IEP (calculated)

6.987

GRAVY (calculated)

-0.425

Length

540 amino acids

Sequence
(BLAST)

001: MTGQRSSYGK RSHSHSDSDA GSKNKRRNPA ADESSSSLIT ADDTVFRYLC PVRKIGSVIG RGGDIVKQLR ADTKAKIRIG DALPGCDERV VTIHSSSEET
101: NHFDETDDLV SPAQDALFRV HQRVIAEDAR EDEDEERNHV TAKLLVPSDQ IGCVIGKGGQ IVQNIRSETG AQIRILKDDR LPPCALSTDE LVQISGEAAV
201: VKKALFQIAA QIRDNPSRSQ HLLASAVPGG YATGGPGAGA PIMGVAPFVG AYGGYKGDTG DWSRSLYPAP RDEASMREFS VRFVCPTGNI GGVIGKGGAI
301: INQIRQDSGA TIKVDSSATE GDDCLIIIST KEFFEDSFSP TIEAAVRLQP RCSEKVERDS GIVSFTTRLL VPTSRIGCLI GKGGTIVTEM RRLTKANIRI
401: LSKDNLPKIA SEDDEMVQIS GDLDVAKDAL VQALTRLRAN LFDKERAVSG FLPVLPYLPA SVDGSDGLNY DSRDGKRHGR GGYSGGYGGS SDLASGDGYG
501: SYGNSQLGSS GGAYGNYSLG RTSAYGSSQN GSSRRRNHAY

Best Arabidopsis Sequence Match ( AT1G14170.3 )
(BLAST)

001: MASTLRNIHG KRSNLQSEFT GNGGSKRRNL HDETDQNVIA SEDTVYRYLC PVKKTGSIIG KGGEIAKQIR SETKSNMRIN EALPGCEERV VTMYSTNEEL
101: NHFGDDGELV CPALDALFKV HDMVVADADQ DDGTDDDNDL GEKQTVTVRM LVPSDQIGCV IGKGGQVIQN LRNDTNAQIR VIKDHLPACA LTLSHDELLL
201: IIGEPLVVRE ALYQVASLLH DNPSRFQHLL LSSSSSSMHQ PGAMLMSAAL TSSHRNYAVR RDIADAREFC VCFICPAENV GGVIGKGGGF INQIRQETGA
301: TIRVNTSETD DDDCIIFISS KEFYEDQSPA VNAAIRLQQR CSEKVGKDAN DLAISTRLLV SSSQIGCLIG KGGAVISEMR SVTRANIRIL QKEDVPKIAR
401: EDEEMVQITG SPDAAMKALT QVILRLRANS FDMDHGLVLL PTSFPYIPQV TESSSKSKYA KRDDHSKLNS NSKRRNHVS

Arabidopsis Description

F7A19.25 protein [Source:UniProtKB/TrEMBL;Acc:Q9XI71]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.